RetrogeneDB ID:
retro_trub_14
Organism:
Location:
scaffold_3:3722193-3723420 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.65 %
Coverage:
96.09 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
EIF4A2
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_14
GTTAATCTTAATACAAACATGTACAGACAACCAGATCATCCAGAGAATCCAGCTCCTTCA
GAGACAGAGGAGATAATCAATGAAAACTGGGATCATGCTGCAGAGTGTTTTGAAGACATG
AAGCTGAATGAGAATCTGCTCAGAGGCATCTTTGCGTATGGATTTGAGAAGCCTTCTTTC
TTTCAACAGCGAGTCATCATTCCGTGCATCAAAGGACATGATGTCATCGCACAATCACAG
TCAGGAACTGGAAAGACAGGGACCTACGTCATCTCCGTCCTGCAGAGAATTAATGTGACC
ATAAAAGAGACCCAGGCTATTATCCTGGCACCCACCAGAGAGCTGGCTCACCAAATTCAG
AAAGTTGTGCTCAGTCTGGGGGACTACATGGGGGTCTGCTGCCATGCCTGTGTTGGAGGG
ACAAGCTTTTGTCAGGAGATAGATACCCTGAAGTCATCGAGTCCTCACATCATCGTGGGA
ACACCAGGACGTGTCTTTGACATGTTAATGTGCAGGGTCATCTTTCCCAGGGCCATACAA
ATGCTGGTGCTTGATGAAGCAGATTGGATGCTGGGTCAGGACAAGGACCAAATTTATAAA
ATCTTCCTTAAACTGCCAACTAATATCCAAGTGGTCCTAATGTCAGCAACCATGTCACCT
GATGTTCTGGAGGTCACAAAATTTTTTATGCAGAATCCAAAGAAAATCCTTGTTACAAAG
GAGGAACTGTCCCTGGAGGGGATTCGACAGTTCTATGTTAACACTGAAAAAGAAGAGTAT
AAACTGGAAACCCTGTTTGACCTGTATGAGACTCTCACCATTAGCCAAGCTGTCATTTTT
GTAAACACCAGCAGGAAAGCAGAGTGGCTGGCTCAGCGGCTGACATCAGAAGATTTCACA
GTCTCTGTCCTGCATGGAGAGATGGAGCAGAGCGAGAGGGATGTTGTCATGAAGGAGTTT
CGCTCTGGCTCCAGCCGAGTGCTGATTACCACTGATCTGATGGCCCGAGGAATCGATGTT
CAGCATGTGTCAGTGGTGATCAATTACGACCTCCCCACCAACGTGGAGAACTACATCCAC
GGAATTGGTCGAGGTGGTCAATTTGGTAGGAAGGGAGTGACCATAACCATGGTGACAGAA
GACAGCCAGCACACACTCTTAGAAATCCAAAAGTTTTACAGCATCCAAATTGAGGAGCTT
CCCATAGATGTGGCTGGTATCCTTTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PDGMEPDGIIESNWTEITDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIDQKETQALVLAPTRELA
P...E...II..NW......F.DM.L.E.LLRGI.AYGFEKPS..QQR.IIPCIKG.DVIAQ.QSGTGKT.T..IS.LQ......KETQA..LAPTRELA
Retrocopy
PAPSETEEIINENWDHAAECFEDMKLNENLLRGIFAYGFEKPSFFQQRVIIPCIKGHDVIAQSQSGTGKTGTYVISVLQRINVTIKETQAIILAPTRELA


Parental protein
QQIQKVILALGDYMGAACHACIGGTNLRNEIQKLQAEAPHIVVGTPGRVFDMLTRGHLYSKLIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVLLS
.QIQKV.L.LGDYMG..CHAC.GGT....EI..L....PHI.VGTPGRVFDML.........I.M.VLDEAD.ML....KDQIY.IF.KL.TNIQVVL.S
Retrocopy
HQIQKVVLSLGDYMGVCCHACVGGTSFCQEIDTLKSSSPHIIVGTPGRVFDMLMCRVIFPRAIQMLVLDEADWMLGQD-KDQIYKIFLKLPTNIQVVLMS


Parental protein
ATMPAEVLEVTKKFMRDPVRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDV
ATM...VLEVTK.FM..P..ILV.KEEL.LEGI.QFY.N.E.EE.KL.TL.DLYETLTI.QAVIF.NT.RK..WL.......DFTVS.LHG.M.Q.ERDV
Retrocopy
ATMSPDVLEVTKFFMQNPKKILVTKEELSLEGIRQFYVNTEKEEYKLETLFDLYETLTISQAVIFVNTSRKAEWLAQRLTSEDFTVSVLHGEMEQSERDV


Parental protein
IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEDDRRVLRDIETFYNTTVEEMPMNVADLI
.M.EFRSGSSRVLITTDL.ARGIDVQ.VS.VINYDLPTN.ENYIH.IGRGG.FGRKGV.I..VTED....L..I..FY....EE.P..VA...
Retrocopy
VMKEFRSGSSRVLITTDLMARGIDVQHVSVVINYDLPTNVENYIHGIGRGGQFGRKGVTITMVTEDSQHTLLEIQKFYSIQIEELPIDVAGIL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide