RetrogeneDB ID:
retro_trub_15
Organism:
Location:
scaffold_89:871677-872253 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.88 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_15
ATGCAGACCATAAAGTGTGTGGTGGTTGGTGATGGGGCAGTAGGTAAAACCTGCCTACTC
ATCTCATACACAACTAATGCCTTCCCAGAGGAGTACATACCCACTGTGTTTGACAACTAC
AGTGCTCAGATGAGCGTAGATGGCCGCACTGTTAGCCTTAACCTGTGGGACACAGCCGGC
CAGGAGGAGTATGACCGCCTGCGTACTCTCTCTTATCCACAAACCAACGTCTTCATCATT
TGCTTTTCAATTGGCAGCCCCTCCTCTCATGCCAATGTCAGACACAAGTGGCATCCTGAG
GTGTCTCACCACTGCCCCAATGTGCCCATCCTGCTGGTGGGCACCAAGAAGGACCTGAGG
GGTGATACAGAAACAGTGAAGAAGCTGAAGGAGCAGGGCCTGGCTCCTACCACCCACCAG
CAGGGCAACGCCTTGGCCAAGCAGATTGGTGCCGTCAAGTACATGGAGTGCTCCGCTCTG
CTGCAGGATGGCGTCAGAGAGGTGTTTGCTGAAGCCGTGAGGGCAGTTTTGTATCCAGTA
GCAAAAAAGAACCCCAAAAAATGCGTGCTGTTGTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE
MQ.IKCVVVGDGAVGKTCLLISYTTNAFP.EYIPTVFDNYSA...VDG..V.L.LWDTAGQE.YDRLR.LSYPQT.VF.ICFS..SP.S..NVR.KW.PE
Retrocopy
MQTIKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQMSVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIGSPSSHANVRHKWHPE


Parental protein
VRHHCPNTPIILVGTKLDLRDDKDTIEKLREKKLSPITYPQGLAMAKEISAVKYLECSALTQRGLKTVFDEAIRAVLCPPPAKKKHKKCSLL
V.HHCPN.PI.LVGTK.DLR.D..T..KL.E..L.P.T..QG.A.AK.I.AVKY.ECSAL.Q.G...VF.EA.RAVL..P.AKK..KKC.LL
Retrocopy
VSHHCPNVPILLVGTKKDLRGDTETVKKLKEQGLAPTTHQQGNALAKQIGAVKYMECSALLQDGVREVFAEAVRAVLY-PVAKKNPKKCVLL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide