RetrogeneDB

RetrogeneDB ID:
retro_trub_16
Organism:
Fugu ( Takifugu_rubripes )
Location:
scaffold_214:483898-485752 (+)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
ENSTRUG00000009479
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.89 %
Coverage:
62.2 %
Frameshifts:
0
Stop codons:
0


Parental gene:
ENSTRUG00000012022
Parental gene symbol:
FEM1C
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_16
ATGGACATATCGACGGCGGTTTTCAACGCGGCCAGGGATGGTAAGCTGAAACTTATCCAG
AAGTTGCTGAGCAACAAAACTCCTGAGGAACTAGAGACATTAGCCGAGGAGAAAACCCAG
GGAGGCACACCTCTGTTGATCGCCTCTCGATACGGACATTTAGAGGTGGTCGATTACCTC
CTCGAACACTGTAAAGCCAATGTTGAACTCGGGGGGGCGGTCAACTTTGACGGCGAGACC
ATCGAAGGTGCTCCGCCGCTGTGGGCGGCATCGGCGGCCGGTCACCTCCCGGTGGTGAAG
AGGCTACTGAAACGCGGAGCCTCCGTCAACAATGCCACACTAACCAACTCGACGCCCCTG
CGGGCCGCCTGCTTTGACGGGCATCTCGAGATAGTCCGATATCTGGTGGACCACAGAGCC
GACATGGAGGTGGCCAACCGCCACGGCCACACCTGCCTCATGATCTCGTGTTACAAGGGC
CACAAGGAGATCGCCAAGTTCCTGCTGGACCGAGGAGCTGATGTCAACCGCAAGAGCGTG
AAGGGCAACACCGCCCTGCACGACTGCGCCGAGTCGGGGAGTCTTGACATCATGAAGATG
CTGCTAAAGTGCGACGCTCAGATGGAAAGGGACGGGTACGGCATGACCCCGCTCCTCGCT
GCCAGCGTAACCGGTCACGCCAACATCGTGGTGTACCTCGTCCACCAGACGCGGACCTCC
AGAGAGGAACGCGTCGACGCTCTCGAGCTCCTCGGGGCGACGTTTGTGGACAAAAAGAGG
GATCTGCTCGGTGCAATGAGGTACTGGAGATGGGCCATGGAGCTGAGGCACCCAGTGTAT
ATCACCGAATCCCTGGCCAAGCCCCCGCCTGGTCCTCCCGTCCCAGCATACGGCTGCGCT
CAGGAGGTGAACACCGTAGAGGAACTCGAGGCTTTGATCACAGACCCCGATGAAATGAGG
ATGCAGGCTTTGCTGATCCGCGAGCGCATCCTCGGACCTTCTCATCCGGACACTTCTTAT
TATATCCGCTACAGGGGAGCCGTGTACGCCGACTCGGGCAACTTTGAGCGGTGCATCAGC
CTGTGGAAGTATGCTTTAGACATGCAGCAGAGCAACCTCGACCCTCTCAGTCCAATGACG
GCCTCCAGTTTCCTCTCCTTCGCAGAGCTCTTCTCTTTTGTCCTTCAGGACCGCGCCAAG
GGCACCATGTCCACGCGCGTCACCTTCTCCGACCTGATGACGGTGCTGGGGAAAAGCGTG
CGGGAAGTAGAGAGAGCGATGGCCCAGAACGGCAACCTGCCCGAAGCCTCCCAGTTCACC
AAAGCGCTCTCCATCATCCTGCACCTCATCTTCCTCCTGGAGAAGCTGGACTGTAGTCCG
GAGCAGGAGCACCAGAAGAAGCACACCTTGTACCGCCTGCTGAAGCTGAATCCCCGCGGC
CGCAGCGGCTTCACCCCCCTCCACATGGCCGTAGACAAAGAGACCACGTCGGTGGGCCGC
TACCCCGTGGGTCGCTTCCCCTCTCAGGCAGTGGCGGCGGTACTCCTAGAATGCGGCGCC
GACATCGATTCCCGGGACTACGACAACAACACGCCGCTGCACGTCGCTGCTAGCAACGGC
TGCCCGGAGATCATGGCTCTGCTCATAAAGGCCGGGGCTCATTTCGACGCGAAGAACGCC
CAGAGGAAGATGGCCTACGAGCTGCTGGACGAGCCGAGCAGCGGCCACCCCGCCATCTAC
CCGCTGAACTGCGTCACCCTTCAGTGCCTGGCGGCTCGTGCCATCGAGAAGCACAGACTC
CCCTACAGGGGGCTCATTTCTGAGGAGATGGAGGCTTTCATTGAGCTGCACTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VHGCLTLFKILLSPQQTRHEARIDALELLGATFVDKKRDLLGALKYWKRAMDLRY-MDSNNIVQKPEPKQLIMAYDYAKEVTNGEELDGLISDPDEMRMQ
V.G.......L.....T..E.R.DALELLGATFVDKKRDLLGA..YW..AM.LR..........KP.P.....AY..A.EV...EEL..LI.DPDEMRMQ
Retrocopy
VTGHANIVVYLVHQTRTSREERVDALELLGATFVDKKRDLLGAMRYWRWAMELRHPVYITESLAKPPPGPPVPAYGCAQEVNTVEELEALITDPDEMRMQ


Parental protein
ALLIRERILGPQHPDTSYYIRYRGAVYADSGNFERCINLWKYALDMQQSNLDPLSPMTASSLLSFAELFSFMLQDRAKGLLGTSISFEDLMGILSKGVLE
ALLIRERILGP.HPDTSYYIRYRGAVYADSGNFERCI.LWKYALDMQQSNLDPLSPMTASS.LSFAELFSF.LQDRAKG...T...F.DLM..L.K.V.E
Retrocopy
ALLIRERILGPSHPDTSYYIRYRGAVYADSGNFERCISLWKYALDMQQSNLDPLSPMTASSFLSFAELFSFVLQDRAKGTMSTRVTFSDLMTVLGKSVRE


Parental protein
IERAVKHSGPTALDPAQLSKALSIILHLICLLEKVPCTAEQDHFKKETIYRFLKLQPCGKNGYSPLHLAVDRNTTCVGRYPVCKFPSLTVASILLECGAD
.ERA....G.......Q..KALSIILHLI.LLEK..C..EQ.H.KK.T.YR.LKL.P.G..G..PLH.AVD..TT.VGRYPV..FPS..VA..LLECGAD
Retrocopy
VERAMAQNGNLP-EASQFTKALSIILHLIFLLEKLDCSPEQEHQKKHTLYRLLKLNPRGRSGFTPLHMAVDKETTSVGRYPVGRFPSQAVAAVLLECGAD


Parental protein
VNSRDNDDNSPLHVAASNGHPDIMNLLISSGSHFDSTNAFQQTACDLLDAKELSRNVIQPINHTTLQCLAARTIIKHRLNYRGNIPEKLEAFVLLH
..SRD.D.N.PLHVAASNG.P.IM.LLI..G.HFD..NA....A..LLD........I.P.N..TLQCLAAR.I.KHRL.YRG.I.E..EAF..LH
Retrocopy
IDSRDYDNNTPLHVAASNGCPEIMALLIKAGAHFDAKNAQRKMAYELLDEPSSGHPAIYPLNCVTLQCLAARAIEKHRLPYRGLISEEMEAFIELH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide






stat4u