RetrogeneDB ID:
retro_trub_18
Organism:
Location:
scaffold_527:78265-79327 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.5 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
TRU.1921
Parental gene aliases:
No gene alias available
Parental gene description:
rod-like opsin [Source:RefSeq peptide;Acc:NP_001029021]

Genomic region (view in browser)





>retro_trub_18
ATGAACGGCACGGAGGGACCATTTTTCTATGTCCCCATGGTAAACACCACCGGCGTCGTC
CGGAGTCCTTATGATTACCCTCAGTACTATCTCGTCAACCCAGCAGCTTACGCCGCTCTG
GGGGCCTACATGTTCCTGCTCATCCTTCTCGGCTTCCCCATCAACTTCCTCACTCTGTAT
GTCACCATTGAACACAAGAAGCTGCGGACCCCTCTAAACTACATCTTGCTCAACCTGGCA
GTCGCCGACCTCTTCATGGTGTTCGGAGGATTCACCACAACGATGTACACCTCTATGCAC
GGCTACTTTGTGCTTGGACGCCTTGGTTGCAATCTGGAAGGCTTCTTCGCCACCCTGGGA
GGTGAGATTGGCCTCTGGTCGCTAGTTGTTTTGGCTATTGAAAGGTGGGTGGTCGTCTGC
AAGCCCATCAGCAACTTCCGCTTCGGGGAGAATCACGCAATCATGGGTTTGGCCTTCACC
TGGATCATGGCCTCTGCCTGTGCCGTTCCCCCTCTCGTCGGCTGGTCCCGTTACATCCCT
GAGGGCATGCAGTGTTCATGCGGAGTCGACTACTACACCCGTGCAGAGGGATTCAATAAC
GAGTCCTTTGTTATCTACATGTTCGTCTGCCACTTCCTCATTCCACTGATAATCATCTTC
TTCTGCTACGGCCGTCTGCTCTGCGCCGTCAAGGAGGCCGCTGCTGCCCAGCAAGAGTCC
GAGACCACCCAGAGGGCTGAGAGGGAGGTCACCCGCATGGTCATTCTCATGGTCATTTCC
TTCCTGGTATGTTGGTTACCATATGCTGGTGTGGCCTGGTACATCTTCACACATCAGGGC
TCTGAGTTTGGACCCGTCTTCATGACCATCCCGGCCTTCTTTGCCAAGAGCTCCTCCATC
TACAACCCGATGATCTACATCTGCATGAACAAGCAGTTCCGCCACTGCATGATCACCACC
TTGTGCTGCGGGAAGAACCCCTTCGAGGAGGAAGAGGGCGCGTCCACTACTTCCAAGACC
GAGGCCTCTTCCGTCTCCTCGAGTTCTGTGTCTCCTGCGTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWKYSLVAAYMLFLIITAFPVNFLTLFVTVKHKKLRTPLNYVLLNLAVADLFMVIGGFTVTLYTALH
MNGTEGP.FY.PM.N.TGVVRSP..YPQYYL..P..Y....AYM..LI...FP.NFLTL.VT..HKKLRTPLNY.LLNLAVADLFMV.GGFT.T.YT..H
Retrocopy
MNGTEGPFFYVPMVNTTGVVRSPYDYPQYYLVNPAAYAALGAYMFLLILLGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMH


Parental protein
AYFVLGVTGCNIEGFFATLGGEIALWSLVVLAVERYIVVCKPMTNFRFGEKHAIAGLVFTWIMALTCATPPLLGWSRYIPEGMQCSCGIDYYTPKPEINN
.YFVLG..GCN.EGFFATLGGEI.LWSLVVLA.ER..VVCKP..NFRFGE.HAI.GL.FTWIMA..CA.PPL.GWSRYIPEGMQCSCG.DYYT.....NN
Retrocopy
GYFVLGRLGCNLEGFFATLGGEIGLWSLVVLAIERWVVVCKPISNFRFGENHAIMGLAFTWIMASACAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNN


Parental protein
TSFVIYMFILHFSIPLAIIFFCYSRLLCTVRAAAALQQESETTQRAEKEVTRMVIVMVISFLVCWVPYASVAWYIFANQGTEFGPVFMTAPAFFAKSAAL
.SFVIYMF..HF.IPL.IIFFCY.RLLC.V..AAA.QQESETTQRAE.EVTRMVI.MVISFLVCW.PYA.VAWYIF..QG.EFGPVFMT.PAFFAKS...
Retrocopy
ESFVIYMFVCHFLIPLIIIFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVILMVISFLVCWLPYAGVAWYIFTHQGSEFGPVFMTIPAFFAKSSSI


Parental protein
YNPVIYILLNRQFRNCMITTVCCGKNPFGDDDAATTVSKTQSSSVSSSQVAPA
YNP.IYI..N.QFR.CMITT.CCGKNPF.....A.T.SKT..SSVSSS.V.PA
Retrocopy
YNPMIYICMNKQFRHCMITTLCCGKNPFEEEEGASTTSKTEASSVSSSSVSPA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide