RetrogeneDB ID:
retro_trub_2
Organism:
Location:
scaffold_141:447188-447965 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.86 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
rab34a (1 of 2)
Parental gene aliases:
No gene alias available
Parental gene description:
RAB34, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-041010-197]

Genomic region (view in browser)





>retro_trub_2
ATGAACCTCCTTCCTCCCATCCAGAACGACCGCATCATCTCTCGGCTCCCCCAGTGTTTT
AGGAGAGAGGCTGCGTTGCACAGAAGGGAGAACTTTAACGACAAGGTCAAGACGGCCTGT
CAGGAGCAGCCTAGCGGACGCCTGGCTTATAAGATCTCTAAAGTGATCGTGGTGGGCGAC
CTGGCTGTGGGCAAGACCTGTCTGATTAATAGGTTTTGCAAAGACGTCTTTGATAGAAAC
TATAATGCAACGTTGGGGGTGGACTTTGAGATAGAGAATTTCCAGGTGCTGGGTGTTCCC
TTCACGCTCCAGCTATGGGACACCTCAGGACAAGAGAGGTACAAATGTATCGCTTCCTCG
TACTACAGAGGAGCTCAGGTCGTGATCGTCGCCTTTGACGTGAACGATATCGGCTCCTTT
TCCCATGTGAGGCAGTGGCTGGAAGAGTCATTGGAGGACAACGACGTAGCAGCTATCCAG
CTGTTCCTCGTGGGCACGAAGAAAGACCTGAGCTCTCCCGCTCAGTACTCTCAGATGGAA
CGAGACGCTCTGAAGCTAGCGCGGGAGATCGGCGCGGAGTACTGGGCCGTGTCGTCGCTG
ACAGGGGAGAACGTCAACGAGTTTTTCTCTCGGGTCGCCTCACTGGGGTTCGAGAACAGC
ATCCTGGCCGAGTTGGAGGAAAAAGGGTCGGCCACGCAGATGGGCGAGGTCCCAATAAGC
AGCCACTTGCTGTACATCCCATCAAAGAAGGAGAAAAAGTGCAGCTGCTGCCAGTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSVLPPIRKDRVIARLPQCFRKEAALHTKEDFNNKVKTACQEQRTGTVGRFKISKVIVVGDLAVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGV
M..LPPI..DR.I.RLPQCFR.EAALH..E.FN.KVKTACQEQ..G.....KISKVIVVGDLAVGKTCLINRFCKDVFD.NY.AT.GVDFE.E.F.VLGV
Retrocopy
MNLLPPIQNDRIISRLPQCFRREAALHRRENFNDKVKTACQEQPSGRLA-YKISKVIVVGDLAVGKTCLINRFCKDVFDRNYNATLGVDFEIENFQVLGV


Parental protein
PFSLQLWDTAGQERFKCIASTYYRGAQVVIIAFDVNDIGSFSHVRQWLEDSLKENDPTAVQLFLVGTKKDLSSPAQYSQMEQEALKLAQELSAEYWAVSS
PF.LQLWDT.GQER.KCIAS.YYRGAQVVI.AFDVNDIGSFSHVRQWLE.SL..ND..A.QLFLVGTKKDLSSPAQYSQME..ALKLA.E..AEYWAVSS
Retrocopy
PFTLQLWDTSGQERYKCIASSYYRGAQVVIVAFDVNDIGSFSHVRQWLEESLEDNDVAAIQLFLVGTKKDLSSPAQYSQMERDALKLAREIGAEYWAVSS


Parental protein
LTGENVNEFFFRVASLAFETSVLAELEKSGS-RQIGEVVRISSNSSNLNRSSKKKQSNCCQ
LTGENVNEFF.RVASL.FE.S.LAELE..GS..Q.GE.V.ISS..........KK.S.CCQ
Retrocopy
LTGENVNEFFSRVASLGFENSILAELEEKGSATQMGE-VPISSHLLYIPSKKEKKCS-CCQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide