RetrogeneDB ID:
retro_trub_20
Organism:
Location:
scaffold_868:1258-3535 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.58 %
Coverage:
77.88 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_20
ATGTCGGGAAGGACAATGAGACGGCAAGTATCGTTGTTATTCTCCATCATTTGTCTCGGA
TTTGGGACCGGGCAGATCACCTACTCGATCCCAGAGGAAATGAACAAAGGTTCTGTGGTC
GGAAACATCGCACAAGATTTGGGGATTGATGTTAAACGCCTTAATTCAGGCAAAGCGCGC
ATCTACACAGGAGACAGTGTTCAGTATGTGGAGCTAAACAGAGGCAGAGGAGCCCTCCTT
GTTAAAGAGAAAATAGATCGCGAAGCTCTCTGCAGGCAGACGACGCCTTGTGCTTTGCAT
TTCCAAGTCACTTTAGAGAACCCATTAGAATTGTTTCCAGTTACGGTGGAAATTACAGAT
ATCAATGACAACGCTCCCGTGTTCCAGAAGGAGGAGAAAAGGTTTGAGATAAGCGAATCC
GCGATCGTTGGCTCGAAGTTCATGCTGGAGAAAGCGATCGACCCTGATATCGGAATGAAT
GGGCTGCAGAGATACACGTTAAAACCCAGTGACAATTTTGTTCTGAAGCTACACACTGAG
TCGGATGGCGATAAAAAGGTAGAAATGATTTTGCAGAAGCCGCTGGATCGAGAGAAGCAG
GAGCACATCTCTTTACTTCTGACAGCAGAGGACGGAGGTGAACCGCAGATGACTGGAACA
ATGCGGATTTATGTTGCTGTGCTGGATGTAAATGACAATGCCCCTGTATTCACCAAACCT
GTTTATAAAGCAAATATTGCAGAAAACGCCGTCAGAGGAACGCTTATAACAAAGGTCAGT
GCCTCTGATGCAGACAAAGGCTCGCATGGCGAAGTCAGTTACGTCATAGCAAATAGCATG
GACCCAGCCTCGAATTTATTTCACGTAAATAGCGAGGGAGATGTCATCTTGAACGGTCCG
ATAGACTATGAAAGAGAAAAGCATTACGATATAGATGTAGAAGCAATTGATTCAGGTGGG
CTCTCAGATTCCAGTAAGATAATAATTGATGTTATTGACGTAAATGACAATAAACCAACT
ATAAATATAATATCAGCCTCTGGCTCAGTAACAGAGGATTCAGCACTCAAAACTGTAATA
GCACTGATGAGTGTTAATGACCCTGATTCTGAAAACAATGGAAAGGTGCAATGTATGATA
AATGAAAATATCCCATTTGAAATTAAATTTACATCGAATAATGTTTATAGTTTATTAACA
GAGAGAGAGTTGGACAGAGAGAGAGAATCCGAGTATAACATCACAGTGAGCTGCTCTGAT
GAGGGAGTGCCCTCCCTCTCCAGCAGCGTCACTCTCACCTTACAGATCTCTGATGTCAAT
GACAACCCTCCTGTCTTTGAGAGGAGCTCATATGAGGCCTACATTGTAGAAAACAACACA
CCAGGTCTCTCTGTATTCACAGTCAAAGCCAGAGACACTGACTGGAACCAGAACGCTCGT
GTTTCCTACATCCTGGAGGACTCCTCTGTTAACGGAGTTCCAGTCTCCTCATATGTGTCC
GTTAGTGCTGATAGTGGAGTCGTCCATGCAGTGCGCTCTTTTGACTACGAGCAGATCAAA
GACTTTCACTTCCTGGTCAAAGCTCAGGATGGAGGTTCTCCTCCACTCAGCAGCAACGTG
AGCGTGAAAATCCTGATCCAGGACCAGAACGATAACCCCCCTCAGGTTCTGTACCCGGTC
CAGACTGGAGGCTCTATGGTGGCTGAAATGGTGCCTCGTTCAGCAGATGTGGGCTACCTG
GTGACTAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCCTGGCTCTCCTATAAA
CTGCAGAAAGCCACAGACAGGGCCCTGTTTGAAGTGGGCCTCCAGAATGGAGAGATCAGA
ACCATCCGCCAAGTGTCTGATAAAGATGCTGTCAAACAAAGACTGAGTGTCATCGTGGAG
GACAACGGGCAGCCCTCTCGTTCAGCTACAGTCATTGTGAACGTGGCGGTGGCCGACAGC
TTCCCTGAAGTGCTGTCAGAGTTCACTGACTTTGCTCACGACAAGGAGTACAATGACAAC
CTGACTTTTTACTTAGTCTTGGCTTTGGCTGTGGTCTCCTTCCTCTTCATCACCTGTTTA
GTGGTTATTATATCAGTCAAGATCTACAGGTGGAGACAGTCTCGCATCCTGTATCACTCC
AGTCTGCCTGTCATTCCATATTATCCACCACGTTACTCAGACACTTTGGGGACAGGGACT
CTCCAACACGTGTACAACTACGAGGTGTGCAGGACCACTGACTCCAGAAAGAGTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RTMRRQVFFFTMLFSLDSVLGQVSYSIPEEMPKGSVLGNIARDLGLDVKRLKSGKARIFTGDSAEYIELNRDRGVLLVKDRIDRETLCKQTTPCALHLQI
RTMRRQV........L....GQ..YSIPEEM.KGSV.GNIA.DLG.DVKRL.SGKARI.TGDS..Y.ELNR.RG.LLVK..IDRE.LC.QTTPCALH.Q.
Retrocopy
RTMRRQVSLLFSIICLGFGTGQITYSIPEEMNKGSVVGNIAQDLGIDVKRLNSGKARIYTGDSVQYVELNRGRGALLVKEKIDREALCRQTTPCALHFQV


Parental protein
ILENPMELFRITVEITDINDNSPVFKKEEMRFRISESAVIGAKFVLERAMDLDVGVNGLQSYSLKPTDNFQLKLQDQQDGSKKVEMILQKNLDRETQEHL
.LENP.ELF..TVEITDINDN.PVF.KEE.RF.ISESA..G.KF.LE.A.D.D.G.NGLQ.Y.LKP.DNF.LKL....DG.KKVEMILQK.LDRE.QEH.
Retrocopy
TLENPLELFPVTVEITDINDNAPVFQKEEKRFEISESAIVGSKFMLEKAIDPDIGMNGLQRYTLKPSDNFVLKLHTESDGDKKVEMILQKPLDREKQEHI


Parental protein
SLILTAVDGGDPQLSGTMRVEISVLDANDNAPVFVQEVYKITIMENAPKGTVFTTVSAVDADEGSYGKVSYFITNTFDDAHAVFQVNEDSGEIILIGNID
SL.LTA.DGG.PQ..GTMR....VLD.NDNAPVF...VYK..I.ENA..GT..T.VSA.DAD.GS.G.VSY.I.N..D.A...F.VN...G..IL.G.ID
Retrocopy
SLLLTAEDGGEPQMTGTMRIYVAVLDVNDNAPVFTKPVYKANIAENAVRGTLITKVSASDADKGSHGEVSYVIANSMDPASNLFHVNSE-GDVILNGPID


Parental protein
YENAKNYHINIRASDDGGLTDSCKVIVEVMDVNDNKPTINIMSKSNIISEHSKLNTVVAMMNVQDPDSAENGRVHCFLNENMPLAIKSTSNNFYSLVTDS
YE..K.Y.I...A.D.GGL.DS.K.I..V.DVNDNKPTINI.S.S....E.S.L.TV.A.M.V.DPDS..NG.V.C..NEN.P..IK.TSNN.YSL.T..
Retrocopy
YEREKHYDIDVEAIDSGGLSDSSKIIIDVIDVNDNKPTINIISASGSVTEDSALKTVIALMSVNDPDSENNGKVQCMINENIPFEIKFTSNNVYSLLTER


Parental protein
ELDRERESEYNITVSCSDEGVPSLSSSVTLTLQISDVNDNPPVFERSSYEAYIVENNTPGLSIFTVKARDADWNQNARVSYILEDSSVNGVPVSSYVSVS
ELDRERESEYNITVSCSDEGVPSLSSSVTLTLQISDVNDNPPVFERSSYEAYIVENNTPGLS.FTVKARD.DWNQNARVSYILEDSSVNGVPVSSYVSVS
Retrocopy
ELDRERESEYNITVSCSDEGVPSLSSSVTLTLQISDVNDNPPVFERSSYEAYIVENNTPGLSVFTVKARDTDWNQNARVSYILEDSSVNGVPVSSYVSVS


Parental protein
ADSGVVHAVRSFDYEQIKDFHFLVKAQDGGSPPLSSNVSVKILIQDQNDNPPQVLYPVQTGGSMVAEMVPRSADVGYLVTKVVAVDVDSGQNAWLSYKLQ
ADSGVVHAVRSFDYEQIKDFHFLVKAQDGGSPPLSSNVSVKILIQDQNDNPPQVLYPVQTGGSMVAEMVPRSADVGYLVTKVVAVDVDSGQNAWLSYKLQ
Retrocopy
ADSGVVHAVRSFDYEQIKDFHFLVKAQDGGSPPLSSNVSVKILIQDQNDNPPQVLYPVQTGGSMVAEMVPRSADVGYLVTKVVAVDVDSGQNAWLSYKLQ


Parental protein
KATDRALFEVGLQNGEIRTIRQVTDKDAVKQRLSVIVEDNGQPSRSATVIVNVAVADSFPEVLSEFTDFAHDKEYNDNLTFYLVLALAVVSFLFITCLVV
KATDRALFEVGLQNGEIRTIRQV.DKDAVKQRLSVIVEDNGQPSRSATVIVNVAVADSFPEVLSEFTDFAHDKEYNDNLTFYLVLALAVVSFLFITCLVV
Retrocopy
KATDRALFEVGLQNGEIRTIRQVSDKDAVKQRLSVIVEDNGQPSRSATVIVNVAVADSFPEVLSEFTDFAHDKEYNDNLTFYLVLALAVVSFLFITCLVV


Parental protein
IISVKIYRWRQSRILYHSSLPVIPYYPPCYSDTLGTGTLQHVYNYEVCRTTDSRKSD
IISVKIYRWRQSRILYHSSLPVIPYYPP.YSDTLGTGTLQHVYNYEVCRTTDSRKSD
Retrocopy
IISVKIYRWRQSRILYHSSLPVIPYYPPRYSDTLGTGTLQHVYNYEVCRTTDSRKSD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide