RetrogeneDB ID:
retro_trub_21
Organism:
Location:
scaffold_53:911880-913752 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
50.95 %
Coverage:
63.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SPAST
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_21
ATCAGGCCAGGCATGAGTGGTGCACACCTGGACGAATGGCAGAGGAGGTCCTTTGACATT
TCATCTGGCAACTGTACACCTGAACAGACGGCCGATGCCTACCGGGCCCATATACTCTCC
ATTCAGTATGCATGGGCAAACTCTCAGCTCTCTCAGGCCAGCATGGCGGTCTTGTTCAGG
ACCTACTCGGAACGCTATGCCAATGTAATGGACTCGGATGACCCTCGCACAGGACTTAAT
AACTATGCAGAGAGTGCACTACATCTTGCTCGTAGTCAAAGGAACCACAGTGACAAGTGG
GTGTCATCTCTGACCATGGAGAATGTGCTGGATCTGCCCTGTTTACAGAGGATGAGGCAA
GCAGAGGGAGGAGATTCCCAGGTGGCAGGAGGAGATGTGAACATCTGCGTGGGGCAAGGA
AGCAGAGGCAGGTTAGAGGCACCATGTAAACCTTTAGGACCACTACAGCCAAAAACAGAA
TTTAATTTTACCACCAACAGTCTTATAACTAAAATTACATCTACAGAGCCAAAAGTCTCT
GAGGTGACCTTGAGTAGTTCAAAACCAGTGTCTCTACATCAGCCTGTCTTTAGTCCTCCT
CCTCTGGGGAATCCTGTTCATGCAGAGGGAACACTAAACTATCATCCCCCGACTTTCTCC
ACTTCAAATCGATCTAAGCGAAAGAATTTTTACAACCAAGATGGTGGAGGTCAAGCAGGC
ACTGACTCGAGAGCAGGAACCAACTTCAAAACGGCTCACGAGCAATTTATTGTTGACCAA
CAGAAAAAACACTCCACTCAGCTCCAGCGAGGTCAGAGTACTGGGGTCTCAGCGACCGTT
AAGAAATCTCTCGGTGCCAACAGGCCACGTGGTGCATTTTCAAAATTTGTGTCACCTATT
CAACGACAGGAAGAAGATGATGGTGGGAAGACTTCGGGTAGCAATAAAGAACCTCAGATC
CTGGATGAACGACTCAAGAACTTTGAACCAAAGATAATTGAGCTGATCATGAGTGAAATC
ATGGATCACGGGCCTCCTGTTGTGTGGGATGACATAGCTGGTCTGGAATTTGCAAAGACC
ACTATAAAGGAGATTGTGGTGTGGCCCATGCTGCGACCTGACATCTTCACTGGGCTCCGT
GGTCCTCCTAAAGGAATCCTGCTGTTTGGGCCTCCAGGGACTGGAAAAACTCTCATAGGT
AAATGCATAGCTTGTCAGTCAGGTGCCACCTTCTTTAGCATCAGTGCATCGTCGCTCACT
TCCAAGTGGGTGGGCGAAGGCGAAAAAATGGTGCGGGCCCTCTTTTCCATCGCTCGCTGC
CATCAGCCTGCTGTTATTTTCATCGATGAGATCGACTCCCTGTTGTCCCAGCGGACAGAC
GGGGAGCACGATTCATCTCGGAGAATAAAAACCGAGTTTTTGGTGCAGTTAGATGGGGCT
GCCACGGCAGCAGAAGATCGCATCCTGGTAGTGGGCGCCACCAACCGACCTCAGGAGATC
GATGAGGCTGCCCGGCGACGACTGGCTAAGAGGTTATACATTCCCCTGCCTGAGGCGACT
GCAAGGTTGCAGATAGTTACTAACCTGATGGCTCAAGAGAAGAACCAGCTGAGAGACCAA
GAGCTGGACAGCGTAGTTACTGCCACGCAGGGTTTCTCTGGTGCGGATATGACTCAGCTC
TGTAGAGAGGCTGCACTGGGGCCAATCCGCAGCATCCAGTTTAGTGACATCACTACTATC
ACTGCAGAACAGGTTAGACCCATACTCTATAGCGACTTCCTGGAAGCCCTAAATACCGTC
AGGCCCAGCGTCTCGTCAAAAGACTTGGAGCTGTATGATGAGTGGAATAAGACGTTTGGA
TGCGGGCGGTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KDQNGKNLAV-KAPRRDMKNFKNVDSKLASLILNEIVESGASVSFEDIAGQELAKQALQEIVILPALRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVA
.D..GK.....K.P.......KN...K...LI..EI...G..V...DIAG.E.AK....EIV..P.LRP..FTGLR.P..G.LLFGPPG.GKT...K..A
Retrocopy
EDDGGKTSGSNKEPQILDERLKNFEPKIIELIMSEIMDHGPPVVWDDIAGLEFAKTTIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIA


Parental protein
AESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSRGDDRVLVMGATNRPQELDEAV
..S.ATFF.ISA.SLTSK.VGEGEK.VRALF..AR..QP..IFIDE.DSLL..R..GEHD.SRR.KTEFL...DG......DR.LV.GATNRPQE.DEA.
Retrocopy
CQSGATFFSISASSLTSKWVGEGEKMVRALFSIARCHQPAVIFIDEIDSLLSQRTDGEHDSSRRIKTEFLVQLDGAATAAEDRILVVGATNRPQEIDEAA


Parental protein
LRRFPKRIYVAMPDTETRFTLLKNLLGKHRNPLSQAELSSLAKNTSGYSGSDLTSLAKDAALGPIREMGPEQVRNMSASEMRNIQMKDFEHSLKRIRPSV
.RR..KR.Y...P....R.....NL.....N.L...EL.S....T.G.SG.D.T.L...AALGPIR...........A...R.I...DF...L...RPSV
Retrocopy
RRRLAKRLYIPLPEATARLQIVTNLMAQEKNQLRDQELDSVVTATQGFSGADMTQLCREAALGPIRSIQFSDITTITAEQVRPILYSDFLEALNTVRPSV


Parental protein
SPVTLTLYARWNKDFG
S...L.LY..WNK.FG
Retrocopy
SSKDLELYDEWNKTFG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide