RetrogeneDB ID:
retro_trub_22
Organism:
Location:
scaffold_68:167960-168839 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.0 %
Coverage:
93.02 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
lrrc30
Parental gene aliases:
No gene alias available
Parental gene description:
leucine rich repeat containing 30 [Source:ZFIN;Acc:ZDB-GENE-050506-25]

Genomic region (view in browser)





>retro_trub_22
ATGGGGGGGAAGCATTCCCGCGGCGTCCCCAAGGAGCTGAGCGATGTGAGTCAAAGGAGA
AACGGTTCCAGAGACGGGCAGTTCAGCGTGCCCTCGGCCACAGAGAGGTTCCGCAGACAC
ACCATGATCCACTTTGGCTACAGCACCCTCAGTCTGGCCATGCAGGGTCTGAGCAGGACC
CCTGCGGAGCTGTGGGAACTCAGAGAGCTGCAAAAACTCAACTTGTCCATGAACTGCCTG
TGCTCCCTGCCCGCTGCCGTAGGCTCTTTGGACAACCTTGTGATCCTTAACCTGTGGGGC
AACAACCTGTCCAGCCTGCCGCCTGAGATCGGCTTGCTGAAGAAGCTGCGCGTCCTCTTT
GCCTGCCGAAACCGACTGAGTGAGGTCCCGGAGGAGCTGGGCTCCTGCACCTGCCTGGAG
GTTCTGAGTTTGGCCAACAACCAGATCGCGAGCCTCCCCGGCAGCTTGGCCACCATGCAC
AACCTGACCAAACTTAATCTCAGCTACAACCACATCGTTCACATCCCCACCTGCGTGTAT
AGCATGAAGGGCTTGGTCTTTCTCCACCTGGCTTGCAACCGTCTGGAGACCATTGCAGAC
CAGATCCAGGATTTGGTCAACCTGAAGATTCTCATTGTGGAGGGAAACAGTATCCACACT
CTTCCCAAGACGCTGTGCTCTATGAACTCTCTCGAACTCCTCAACGTCGACTTCAACGAG
CTGCAAAATGTCCCAGTGGAAATGTATCTTCTGAGCAGACTTGGGAGACTCGCCTGCCAC
CCACTGGATAAAGGACTTCATATTGTTCACAACCCTCTCCTCAAACCCATCCAGGAGGTT
CTACAAGGTGGACTCAGCGCCCTCTATAACTACCTCAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VVTLLFRVQLSSLPAEIGRLQKLRVLFAYRNRLTEVPEELGACTKLEVLSLANNQLSTLPASFSNLTQLKKLNLSHNLIAHVPACVYNMKALVFLHLACN
V...L....LSSLP.EIG.L.KLRVLFA.RNRL.EVPEELG.CT.LEVLSLANNQ...LP.S......L.KLNLS.N.I.H.P.CVY.MK.LVFLHLACN
Retrocopy
VILNLWGNNLSSLPPEIGLLKKLRVLFACRNRLSEVPEELGSCTCLEVLSLANNQIASLPGSLATMHNLTKLNLSYNHIVHIPTCVYSMKGLVFLHLACN


Parental protein
RLDNLAENIQALVELKILIVEGNSLQSLPKALCCLTRLELLNLDFNHIKDVPQELHQLTRLQRLACHPLDTGLHIVHNPLLKPVKEVLEGGLGALYNYLR
RL...A..IQ.LV.LKILIVEGNS...LPK.LC....LELLN.DFN....VP.E...L.RL.RLACHPLD.GLHIVHNPLLKP..EVL.GGL.ALYNYL.
Retrocopy
RLETIADQIQDLVNLKILIVEGNSIHTLPKTLCSMNSLELLNVDFNELQNVPVEMYLLSRLGRLACHPLDKGLHIVHNPLLKPIQEVLQGGLSALYNYLK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide