RetrogeneDB

RetrogeneDB ID:
retro_trub_24
Organism:
Fugu ( Takifugu_rubripes )
Location:
scaffold_154:190213-192136 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
ENSTRUG00000002112
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.5 %
Coverage:
98.62 %
Frameshifts:
0
Stop codons:
0


Parental gene:
ENSTRUG00000000444
Parental gene symbol:
TTC30A
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_24
ATGAGCTCTATAAAGGATGTTGCGTCCATGTCTACAATAGTCAAACTAATTAAAGAAAGC
CAGTATGTTGACGCAATTCAAATTTTAACTGCACAATCTCAAAAACACCCAAAGTCCAGG
GCAGCATTATCTTTGCTGGGTTACTGCTACTATCACATCAACAACTTTAGCGGTTCTGCT
GAATGCTATAAGCAGCTCACTCAGCTGTATCCAGAAGTGGAGGACTACAAGGTGTATTAT
GCTCTGTCCCTGTATAAAGCTGGTGCTTATCCTGAGGCCACTATGGCTTTGTCTGCTCTT
TACAGCAGCAGCCACACCAAGATGCTCAGACTTCAAGCCTGCATCAAATATTGTGAGGAA
AATTACTCTGCTGCTAAGTTGCTGCTAGAGAAGCTTCCCCAAGATGACCCCAACTACATC
TACAATATGGGCTGTTTGCTTTACCAGGAAGGCAAGTACGAAGAGGCCTGTGTGAAGTTC
ACCTCTGGTGTAAAATTGATGGGGTATATTCCAGCATTGTCTTACAACATTGCCTTATGT
TACTATAGCCTAAAAATGTACCCTCAAGCCCTTAAACAAATTGAATACATTAAAAACCAG
GGTTTCAAGGAACATCTACAACTGAGCGTTGGGATGATTTCAGAGGATGACGATTTCCAC
AGCATGGGAAACACACCGGAACATCATCAGACAGTTCTCATCAAAGCCTTAAACCTTAAA
GCCGCCATTGAATATCAGCGGCAGAACCTTAAAATGGCTCAGGAGGCTTTGACACATCTG
TCACCCCGATTCGAGCAAGAGTTAGATCCAGTGACTCTCCACAACCAGGCTCTATTGAAC
ATGGATACAAAACCATCAGACGGTTTCAAGAAGTTGGCCTCCCTGTTGCAGCAGCCATTC
TTTCCTCATGTCACCTTTGCAAATTTGCTGCTCCTCTACTGCAAATATGAGTATGTCTAC
CTAGCAGCTGATGTCCTGGCCGAGAATGCCCATCTTACCCACAAAATTTTCACACCATAT
ATATACGAGTTACTGGATGCCTTGTTGATGAGTCAAAAAACACCGGAGGAAACTTTTAGG
AAATTTGATGACATGTGTGGCAAACTATCTGAGCAAGTACGCAAGCTGGCCAAAAAGGTA
CGAAGGCAGGCAAGAAATAAGGAAGCAAAGATGAAGACTGTGCAGGAATGCAAAGAAATT
TTGGAGAAGTACACTGTGGTCATGATGGCCCAGGCAAAGATCTACTGGAACCGAGAGAAC
TATCATATGGTACAGAAGATTTTCCACAAATCATGGGAGATCTGGTGTGAGGATGACACT
TTGAAGCTGAACATTGCTCATGTGCTTTTCATGCAGAACAAATATAAGAAGGCCATTAGC
TTCTATGAGCCCATTGTCGTTAAACACAGTGATAATATTCTAAATGTAAGTGCTGTGGTC
CTGGCCAACCTCTGTTTTTCCTATGTAATGACCTGCAGCAATACAAAGGCCGAGGAGCTG
ATGAAGGAGATTGAAAAAAAAGAGAAACAGATCTCCAAAGATGACCCCAACAAGATGGTC
TTCCACCACTGCATTGTAAATTTGGTAATAGGGATGTTGTACTGCACAAAGGGAAACTAT
GAGTTTGGCATTTCGTGTGTTATAAAGAACCTGGAGCCTTATGACAAGAAGTTGGGGACT
GACACATGGTTTTACGCCAAGCAATGCTTTCTTTCTCTGCTGGAGAACATGGCCAAACAT
ATGGTCATGCCAGTTGACTCTGTGATAAAGGAGTGTATTCATTTTCTGGAGCAGTGCATG
AGATTTGGTAAAACAGTTCCTGCCCACATCCAGCATCCTCTGGAGGAGAGATGCATTCAA
ATCAGTAAAAATACTGTTGCTTATGAGGCTTGCAAACTCCTGACTCTTTTCTATGAAGTA
ACC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTAIKEGEYTATIFKLIKESQYVDAIQILTVQLQKHPKSRAALSLLGYCYYHIQDFGASAECYEQLTQLHPEVEDYKVYYAQSLYKAGAYPEATKASFAL
M..IK......TI.KLIKESQYVDAIQILT.Q.QKHPKSRAALSLLGYCYYHI..F..SAECY.QLTQL.PEVEDYKVYYA.SLYKAGAYPEAT.A..AL
Retrocopy
MSSIKDVASMSTIVKLIKESQYVDAIQILTAQSQKHPKSRAALSLLGYCYYHINNFSGSAECYKQLTQLYPEVEDYKVYYALSLYKAGAYPEATMALSAL


Parental protein
DNTSSHTKMLKLQACIKYCEQDNSAAKSLLEQLPQDDPDYIYNMGCLLYQDGKYEDACKKFTSAMQVLGYVPALSYNIALCHYSLKMYPQALKHVEDIKN
...SSHTKML.LQACIKYCE...SAAK.LLE.LPQDDP.YIYNMGCLLYQ.GKYE.AC.KFTS.....GY.PALSYNIALC.YSLKMYPQALK..E.IKN
Retrocopy
-YSSSHTKMLRLQACIKYCEENYSAAKLLLEKLPQDDPNYIYNMGCLLYQEGKYEEACVKFTSGVKLMGYIPALSYNIALCYYSLKMYPQALKQIEYIKN


Parental protein
RGIKEHPELSVGMTSEGVDFHSVGNTLELQQTALIEALNLKAAIEYQLKNVKTAQEALTDMPPRSEQELDPVTLHNQALLNMDTKPSEGFEKLAFLLQQP
.G.KEH..LSVGM.SE..DFHS.GNT.E..QT.LI.ALNLKAAIEYQ..N.K.AQEALT...PR.EQELDPVTLHNQALLNMDTKPS.GF.KLA.LLQQP
Retrocopy
QGFKEHLQLSVGMISEDDDFHSMGNTPEHHQTVLIKALNLKAAIEYQRQNLKMAQEALTHLSPRFEQELDPVTLHNQALLNMDTKPSDGFKKLASLLQQP


Parental protein
SFPPVTFANLLLLYCKYEYFDLAADVLAENAHLTYKFLTPYIYEFLDALLMSQTTPEEAFRKLDDMCGKLTEQLRKLAKQVQMQTRDEEAQKKAVQEYNQ
.FP.VTFANLLLLYCKYEY..LAADVLAENAHLT.K..TPYIYE.LDALLMSQ.TPEE.FRK.DDMCGKL.EQ.RKLAK.V..Q.R..EA..K.VQE...
Retrocopy
FFPHVTFANLLLLYCKYEYVYLAADVLAENAHLTHKIFTPYIYELLDALLMSQKTPEETFRKFDDMCGKLSEQVRKLAKKVRRQARNKEAKMKTVQECKE


Parental protein
MLEKYIVVLMAQAKIYWNRENYQMVEKIFHKSLEVWCEDDTLRLNIAHVLFMQNKYKKAISFYEPIVKKHYDNILNVSAVVLANLCVSHIMTSNNAQAEE
.LEKY.VV.MAQAKIYWNRENY.MV.KIFHKS.E.WCEDDTL.LNIAHVLFMQNKYKKAISFYEPIV.KH.DNILNVSAVVLANLC.S..MT..N..AEE
Retrocopy
ILEKYTVVMMAQAKIYWNRENYHMVQKIFHKSWEIWCEDDTLKLNIAHVLFMQNKYKKAISFYEPIVVKHSDNILNVSAVVLANLCFSYVMTCSNTKAEE


Parental protein
LMKKIEKEEEQISNDDPNKKVFHHCIVNLVIGTLYCAKGNYEFGISRVIKSLEPYNNKLGTDTWFYAKRCLLSLLENMAKHMVEPVDSVIKECIQFLEQC
LMK.I...E.QIS.DDPNK.VFHHCIVNLVIG.LYC.KGNYEFGIS.VIK.LEPY..KLGTDTWFYAK.C.LSLLENMAKHMV.PVDSVIKECI.FLEQC
Retrocopy
LMKEIXXXEKQISKDDPNKMVFHHCIVNLVIGMLYCTKGNYEFGISCVIKNLEPYDKKLGTDTWFYAKQCFLSLLENMAKHMVMPVDSVIKECIHFLEQC


Parental protein
EVFGKTVPALIEHPLEESRIHIGKNTVAYEARKLLSLLYEVT
..FGKTVPA.I.HPLEE..I.I.KNTVAYEA.KLL.L.YEVT
Retrocopy
MRFGKTVPAHIQHPLEERCIQISKNTVAYEACKLLTLFYEVT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide






stat4u