RetrogeneDB ID:
retro_trub_27
Organism:
Location:
scaffold_18:1398020-1398872 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.54 %
Coverage:
55.8 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
FZD4
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_27
CCATCCAAGTTCCATTTTGTGGAGAAAAGTGAATCCTGCGCTCCAAAATGTTACCCCAGA
GTGGACGTGTACTGGAGCCAGGGAGACAAGCAGTTCTCTCTCGTGTGGATAGCCATCTGG
TCGATCCTCTGCTTCGTCTCCAGTGCTTTCACTGTGCTCACTTTTCTTATTGACCCACAG
CGGTTTAAATACCCAGAGCGACCAATCATCTTTCTATCTATGTCCTACTGCGTTTATTCC
GTAGGTTACCTCATTCGACTGTTTGTGGGGGCCGAGGGCATAGCATGCGACAGAGACAAT
GGGGTACAGTACATTATCCAGGAGGGCCTGGAAAGCACCGGCTGCACAATTGTGTTCCTC
ATTTTGTATTATTTTGGCATGGCTAGTTCCCTCTGGTGGGTTATCCTGACGCTTACATGG
TTCCTGGCTGCAGGGAAGAAGTGGGGTCACGAGGCCATAGAAGCCAACAGCAGCTACTTC
CACCTGGCGGCGTGGGCCATCCCAGCCGTGAAAACCATCATGATCTTGGTGATGCGGAAG
GTGGCAGGGGATGAGCTGACAGGGATCTGCTATGTGGGCAGCATGGACGTCAAAGCTCTG
ACGGGCTTTGTACTCATCCCCCTCTCTTGTTATTTGATCATCGGCACTTCGTTCCTGTTG
TCCGGATTTGTGGCTCTCTTTCACATCCGAAAGATCATGAAAACAGAAGGCGAGAACACC
GATAAACTGGAGAAGCTGATGGTCCGCATTGGTGTCTTCTCTGTGCTTTACACTGTTCCC
GCCACCTGTGTCATCGCCTGCTACTTCTACGAGAGGCTCAACATGGACTACTGGCACATC
GTTGCGGAAGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PDQYIWLKQTESCTLQCGYDSGLY-RRGTKVFTDAWMAVWAVLCFLSTTLTVLTFVLDSQRFSYPERPIIFLSMCCNLYSVAYLVRWTLGREHVSCDLEA
P.........ESC...C......Y...G.K.F...W.A.W..LCF.S...TVLTF..D.QRF.YPERPIIFLSM....YSV.YL.R...G.E...CD...
Retrocopy
PSKFHFVEKSESCAPKCYPRVDVYWSQGDKQFSLVWIAIWSILCFVSSAFTVLTFLIDPQRFKYPERPIIFLSMSYCVYSVGYLIRLFVGAEGIACDRD-


Parental protein
TAVPVLVQEGLKSTGCAIVFLLLYFFGMASSLWWVILTLTWFLAAGLKWGHEAIEMHSSYFHIAAWAIPAVKTIVILIMRLVDADDLTGLCYVGNQQQEA
..V....QEGL.STGC.IVFL.LY.FGMASSLWWVILTLTWFLAAG.KWGHEAIE..SSYFH.AAWAIPAVKTI.IL.MR.V..D.LTG.CYVG.....A
Retrocopy
NGVQYIIQEGLESTGCTIVFLILYYFGMASSLWWVILTLTWFLAAGKKWGHEAIEANSSYFHLAAWAIPAVKTIMILVMRKVAGDELTGICYVGSMDVKA


Parental protein
LIGFVVAPLATYLLLGTLFICAGLVALFRIRSNLQKDGAKTDKLERLMVKIGVFSVLYTVPASTVIGCYIYQLAHWGEFNTIPQD
L.GFV..PL..YL..GT.F...G.VALF.IR......G..TDKLE.LMV.IGVFSVLYTVPA..VI.CY.Y..............
Retrocopy
LTGFVLIPLSCYLIIGTSFLLSGFVALFHIRKIMKTEGENTDKLEKLMVRIGVFSVLYTVPATCVIACYFYERLNMDYWHIVAEE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide