RetrogeneDB ID:
retro_trub_30
Organism:
Location:
scaffold_20:111646-113557 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.66 %
Coverage:
99.69 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
HSPA8
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_30
GCTAAAGGAATATCCATTGGCATTGATCTGGGCACCACCTACTCCTGCGTGGGAGTTTTC
CAGCACGGCAAAGTGGAGATTATTGCCAACGATCAGGGTAACAGGACCACTCCCAGCTAT
GTGGCCTTCACTGACACAGAGAGGCTGATCGGAGATGCTGCCAAAAACCAGGTTGCCATG
AACCCCACCAACACAATCTTTGATGCCAAACGTCTTATCGGTAGGAAGTTTAACGATGCG
ACGGTCCAGTCAGACATGAAATTATGGCCCTTTAAAGTGATCAGTGATAACGGGAGGCCA
AAGGTACAGGTGGAGTATAAAGGGGAGACCAAGGCCTTCTATCCAGAGGAAATCTCCTCC
ATGGTCCTGGTGAAAATGAAGGAGATAGCTGAGGCCTACCTCGGCCAGAGGGTGTCAAAT
GCAGTCATCACCGTTCCGGCTTATTTTAACGACTCCCAGAGGCAAGCTACCAAGGACGCC
GGTGTGATCTCTGGGCTGAACGTCCTGAGGATCATCAACGAGCCCACAGCGGCAGCCATC
GCTTATGGTTTGGACAAGGGAAAAAGAGGCGAGCGCAACGTGCTCATCTTCGATCTTGGT
GGAGGCACCTTCGACGTTTCCATTCTGACGATCGAGGATGGCATTTTTGAGGTGAAATCC
ACCGCGGGGGACACGCACCTCGGCGGAGAGGACTTTGACAACAGGATGGTCAGCCATTTT
GTTGAAGAATTCAAAAGGAAACACAAGAAAGACATCAGCAATAATAAAAGAGCGGTGAGA
AGGCTGCGGACGGCCTGCGAGCGCGCCAAGCGGACTCTGTCCTCCAGCACCCAGGCCAGC
ATCGAAATCGACTCTCTGTTTGAGGGCATCGACTTCTACACCTCCATCACAAGAGCCCGG
TTTGAAGAGCTCAATTCTGAGCTCTTCAGAGGAACCCTGGACCCGGTAGAGAAGGCTTTG
CAGGATGCCAAGCTGGATAAAACCAGCATCCACGAAATCGTTCTTGTCGGTGGCTCCACG
AGAATTCCCAAAATCCAAAAGCTCTTGCAGGACTTCTTTAACGGCAGAGAGCTGAACAAG
AGCATCAATCCAGATGAAGCTGTGGCCTATGGCGCAGCGGTCCAGGCCGCCATCCTCATG
GGCGACACTTCAGAGAATGTCCAGGATCTCCTGCTGCTGGATGTGGCTCCGCTCTCTCTG
GGTATCGAGACCGCCGGTGGGGTGATGACACCTCTCATCAAGCGGAACACCACCATCCCC
ACCAAGCAGACCCAGATCTTCTCCACATACTCGGACAACCAGCCAGGTGTGCTGATTCAG
GTGTATGAGGGCGAGAGAGCCATGACCAAGGACAACAACCTCCTGGGCAAATTTGAACTC
ACCGGCATTCCTCCCGCTCCTCGGGGCGTGCCGCAGATAGAGGTGACGTTCGACATCGAC
GCCAACGGCATCCTGAACGTGTCGGCCGTCGACAAAAGCACCGGCAAAGAAAACAAAATC
ACCATCACCAACGACAAAGGACGCCTGAGCAAAGAGGAGATCGATCAGATGGTGCAGGAC
GCCGAGAAGTACAAGGCCGAGGATGAGGGGCAGAGGGAGAAGATCGCAGCCAAGAACTCC
CTGGAGTCCTACGCCTACCACATGAAGAGCAGCGTGGAGGACGAGAACATGAAGGGGAAG
ATCAGCGAGGAAGACAAGAGGACGGTCATCGACAAGTGCAACCAGGCCATCTCCTGGCTG
GAGAACAACCAGCTGGCCGAAAAAGACGAGTACGAGCATCAGCAAAGTGAACTGGAGAAG
GTCTGCAAGCCCATCGTGACCAAGCTGTACCAGGGAGCCACGTCATCAGGAGGCAGCAGC
GGCGGCCAGACAGGGGACGGCTCCAAGGGCCCCACCATTGAGGAGGTGGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDHVVQSDMKHWPFNVINDNTRP
.KG...GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD.ERLIGDAAKNQVAMNPTNT.FDAKRLIGR.F.D..VQSDMK.WPF.VI.DN.RP
Retrocopy
AKGISIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFNDATVQSDMKLWPFKVISDNGRP


Parental protein
KVQVEYKGESKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKIAGGSERNVLILI
KVQVEYKGE.K.FYPEE.SSMVL.KMKEIAEAYLG..V.NAVITVPAYFNDSQRQATKDAG.ISGLNVLRIINEPTAAAIAYGLDK...G..ERNVLI..
Retrocopy
KVQVEYKGETKAFYPEEISSMVLVKMKEIAEAYLGQRVSNAVITVPAYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKGKRG--ERNVLIFD


Parental protein
LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKYKKDISDNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITR
LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV.HF..EFKRK.KKDIS.NKRAVRRLRTACERAKRTLSSSTQASIEIDSL.EG.DFYTSITR
Retrocopy
LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHFVEEFKRKHKKDISNNKRAVRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITR


Parental protein
ARFEELNADLFRGTLDPVEKSLRDAKMDKGQIHDIVLVGGSTRIPKIQKLLQDYFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPL
ARFEELN..LFRGTLDPVEK.L.DAK.DK..IH.IVLVGGSTRIPKIQKLLQD.FNG.ELNKSINPDEAVAYGAAVQAAIL.GD.SENVQDLLLLDV.PL
Retrocopy
ARFEELNSELFRGTLDPVEKALQDAKLDKTSIHEIVLVGGSTRIPKIQKLLQDFFNGRELNKSINPDEAVAYGAAVQAAILMGDTSENVQDLLLLDVAPL


Parental protein
SLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIMNVSAVDKSTGKEN
SLGIETAGGVMT.LIKRNTTIPTKQTQ.F.TYSDNQPGVLIQVYEGERAMT.DNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGI.NVSAVDKSTGKEN
Retrocopy
SLGIETAGGVMTPLIKRNTTIPTKQTQIFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKEN


Parental protein
KITITNDKGRLSKEDIERMVQEAEKYKAEDDVQRDKVSSKNSLESYAFNMKSTVEDEKLAGKISDDDKQKILDKCNEVISWLDKNQTAERDEYEHQQKEL
KITITNDKGRLSKE.I..MVQ.AEKYKAED..QR.K...KNSLESYA..MKS.VEDE...GKIS..DK....DKCN..ISWL..NQ.AE.DEYEHQQ.EL
Retrocopy
KITITNDKGRLSKEEIDQMVQDAEKYKAEDEGQREKIAAKNSLESYAYHMKSSVEDENMKGKISEEDKRTVIDKCNQAISWLENNQLAEKDEYEHQQSEL


Parental protein
EKVCNPIITKMYQSAGGMPGAGGAAPGGGSSGPTIEEVD
EKVC.PI.TK.YQ.A....G..G...G.GS.GPTIEEVD
Retrocopy
EKVCKPIVTKLYQGATSSGGSSGGQTGDGSKGPTIEEVD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide