RetrogeneDB

RetrogeneDB ID:
retro_trub_32
Organism:
Fugu ( Takifugu_rubripes )
Location:
scaffold_210:382128-383775 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
ENSTRUG00000008859
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.72 %
Coverage:
87.62 %
Frameshifts:
0
Stop codons:
0


Parental gene:
ENSTRUG00000006239
Parental gene symbol:
DSE
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_32
CACCCCAACCTTTATTTCAGCCCGGAGGACGTGCTGCTCCTGAGGCAGAGGTCGTCCACC
ACCCACAGCCACATATTCAAAGTCGTGCGGTTGGCGGTGCTCACCATGCTCGCCAACGTC
CCCTTCTACATGCCGCCGGCGAAACACGAGGATTTTACGAGCAAATGGAACGAGATTTAC
GGCAACAACCTGCCCCCCCTGGCTCTCTACTGCCTGCTGTGCCCAGAGGACTCTGCCGCT
CTGCAGTTTCTCCTCAAATTTATGGACAGGATGGCCGAGTACCCGGACTGGAAGGTGACC
AGCGCGCCCAACGACGAGGTCCCCACAGCGCATTCCCTCACTGGATTCGCCACCGCGTAC
GACTTCGTCTACAGCTACCTGGACGAGCAGCGCAGGAAAGTTTACCTCAAGAAAATCCGC
TCCGAGACGGAGGAGCTGTATGAGCTGTCAAAGCACCGGGGGTGGGGCAAGCAGTATCTC
CAGAATCATCAGACCACCAACATACTGGCTGTCCTGACTGGTGCCATCGTAGTGGGATCA
CACAAAGACCCAGAGTCCATGTTGTGGAAGCAGGTGGCGGTGAACTACATGGAGAAAACC
ATGTTTCTTCTCAATCACGTGGTGGACGGCTCGCTGGATGAGGGGGTCGCCTATGGGAGC
TACACGGCCAAGTCTGTCACCCAGTATGTTTTCCTAGCGCAGCGCCACTTTGATATCGAC
AATCTTCAGAACAACTGGCTGCGGGGCCACTTCTGGTTCTATTACGCCACCCTGTTGCCA
GGGTTTCAGCGGAGCGTCGGCATCGCAGACTCCAACTACAACTGGTTCTATGGGCCGGAG
AGCCAGCTCGTTTTTCTCGACTCCTTCGTCATGAGGAACGGGACGGGGAACTGGTTGGCC
CAGCAGATCAGGAAACACCGGCCCAAGGACGGACCCATGGGACAATCCTCTGCCCAGCGC
TGGGCGACGCTTCACACCGAGTACATCTGGTACAACCAGCACCTCACACCGCAGCCCCCA
CAGGACTTTGGGAAAGCCAGGATGCATATTTTCTCTAACTGGGGTGTGGTTACCTACGGA
GCGGGGCTGCCCAGCAGTCAGGGTAATACTTTTCTCTCCTTTAAGTCCGGCAAGCTGGGT
GGCCGTGCTGTCTACGACATCGTCCATGACAAGCCTTATTCCTGGGTGGAGGGCTGGAAC
AGCTTTAATCCGGGCCACGAGCACCCTGACCAGAACTCTTTCACTTTCGCCCCTAATGGG
CAGGTGTTTGTGTCTGAAGCACTTTACGGACCCAAGTACAGCTATCTCAACAATGTTCTG
GTTTTCAGCCCATCGCCCACCAGCCAGTGTAACAACCCCTGGGAGGGGCAGTTAGGGGAA
TGTGCTAAGTGGCTTCGCTGGACCGATGATGGTGTGGGTGACGCCAGAGGGGAGGTGATC
GTGGCCTCTTCGCATAGTGACATGATGTTTGTGAGCGGCGAGGCGGCGTTGGCTTACTCC
CCCGCCATGAGGCTAAAGAGTGTATTCCGGGCTTTAGTTCTGCTAAACTCTCAGACGCTG
CTGGTGCTGGACCATGTGGAGAAGTTTGGAGACTCGCCCCTCTCGTCTCTGAGCGCGTTT
TTCCACAACCTTGACATCGACTTTAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
HPMLYFSRGDVEEMQYAAAGTHRDMAKRIRDAGEAMLEHPEEYLPPWSPAEFTARWNEVYGNNLGVLSMFCLLYPHRAGALDLVKDYMERMAAQPSWLVK
HP.LYFS..DV.........TH....K..R.A...ML.....Y.PP.....FT..WNE.YGNNL..L...CLL.P....AL......M.RMA..P.W.V.
Retrocopy
HPNLYFSPEDVLLLRQRSSTTHSHIFKVVRLAVLTMLANVPFYMPPAKHEDFTSKWNEIYGNNLPPLALYCLLCPEDSAALQFLLKFMDRMAEYPDWKVT


Parental protein
DAPWDEVPLAHSLVGFATAYDFMHEYLNKDQQERFLQVIGNASRLMYEKSYVRGWGFQYLHNHQPTNCVALLTGSLVYMTQAKKEAYLWTKQVLSIMEKS
.AP.DEVP.AHSL.GFATAYDF...YL........L..I.......YE.S..RGWG.QYL.NHQ.TN..A.LTG..V.......E..LW.......MEK.
Retrocopy
SAPNDEVPTAHSLTGFATAYDFVYSYLDEQRRKVYLKKIRSETEELYELSKHRGWGKQYLQNHQTTNILAVLTGAIVVGSHKDPESMLWKQVAVNYMEKT


Parental protein
MVLLQDVTDGSLYEGVAYGTYTTRSLFQYMFLVQRHFAIGHFRHPWLLKHFAFLYRTILPGFQRTVAIADSNYNWFYGPESQLVFLDRYVMRNGSGNWLA
M.LL..V.DGSL.EGVAYG.YT..S..QY.FL.QRHF.I......WL..HF.F.Y.T.LPGFQR.V.IADSNYNWFYGPESQLVFLD..VMRNG.GNWLA
Retrocopy
MFLLNHVVDGSLDEGVAYGSYTAKSVTQYVFLAQRHFDIDNLQNNWLRGHFWFYYATLLPGFQRSVGIADSNYNWFYGPESQLVFLDSFVMRNGTGNWLA


Parental protein
DLIHQNRVMEGPGQAGKGQRWCTLHTEFIWYDPGLIPKPPSDFGTSQLHYFEDWGVVTYGSALPADTNRTFLSFKSGKLGGRAIYDIVHRNKYKEWVKGW
..I...R...GP......QRW.TLHTE.IWY...L.P.PP.DFG....H.F..WGVVTYG..LP.....TFLSFKSGKLGGRA.YDIVH...Y..WV.GW
Retrocopy
QQIRKHRPKDGPMGQSSAQRWATLHTEYIWYNQHLTPQPPQDFGKARMHIFSNWGVVTYGAGLPSSQGNTFLSFKSGKLGGRAVYDIVHDKPY-SWVEGW


Parental protein
RNFNAGHEHPDQNSFTFAPNGVPFVAEALYGPKYTLLNNVVLFGSSVSDSCFKPWAGQVTETCDSKWLKYKVGQAADTQGRVEAAMRREGMVFIRGEGHS
..FN.GHEHPDQNSFTFAPNG..FV.EALYGPKY..LNNV..F..S....C..PW.GQ..E....KWL........D..G.V..A.....M.F..GE...
Retrocopy
NSFNPGHEHPDQNSFTFAPNGQVFVSEALYGPKYSYLNNVLVFSPSPTSQCNNPWEGQLGEC--AKWLRWTDDGVGDARGEVIVASSHSDMMFVSGEAAL


Parental protein
AYNPELKIRNFQRNLLLLHPQLLLLVDHIHLQTDSPTRAMSAFFHNTDLPFQ
AY.P........R.L.LL..Q.LL..DH.....DSP....SAFFHN.D..F.
Retrocopy
AYSPAMRLKSVFRALVLLNSQTLLVLDHVEKFGDSPLSSLSAFFHNLDIDFK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide






stat4u