RetrogeneDB ID:
retro_trub_33
Organism:
Location:
scaffold_220:443655-444403 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.23 %
Coverage:
51.09 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
NAMPT
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_33
GAGTGCAACTTCAATATATTGCTAGCAACCGATTCAAGGTGGCACAAACAATACCCATCC
AACACTAGTAAAGTCTACTCCTATTTTGAGTACAGGGAGAAGACAAATTCCAGCAACAGC
AAAAAGATCAAGTACTATAAAACCGTCTTCTACGGCCTGCAGTACATCCTGCACAAGTAC
TTTAAAGGAAAGGTAGTAACTCTAGAAAAGATCCAGGAGGCTAAGAACATTTACAGAGAA
CACTTTCATGATGATGTTTTCAACGAGAAGGGCTGGAGGTACATTTTAGACAAATACAAC
GGACACCTGCCCATTGAAATCAAGGCAGTCCCAGAGGGGATCATTCCTCGGGGCAATGTT
TTGTTCACAGTGGAGAGCACAGACCAAAAATGCAACTGGCTCACCAACTGGGTGGAGACC
CTTTGGGTTCAGATCTGGTACCCCATCACTGTCACCACAAACTCCAGAGAGCAGAAGAAG
ATCCTTGCTCGGTACCTTCTGGAGACCTCTGGGAGCTTGGAGGGCCTGGAGTACAAACTG
CATGATTTTGGCTACAGGGAGCTTCTCCTCACAAGAGACTGCAGGTATAGGAGCGTCTGC
CCATTTGGTAAATTTCAAGGGAACTGACACAATCGCTGACATTGGAGTCATTAAGAAATT
CTACGGGACCAAAGATCCTGTGCCAAGCTTCTCAGTGCCCGCTGCCGAGCACAGTAGCGT
GGGGAAAGAACCACGAAAAGAGGCCTTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DADFNILLATDSYKVTHYKQYPPNTSKVYSYFECREKKTDPSKSHKVKYDKTVFYGLQYILHKYLKGKVVTPEKIQEAKNVYREHFQDDVFNEKGWTYIL
...FNILLATDS......KQYP.NTSKVYSYFE.REK.T..S.S.K.KY.KTVFYGLQYILHKY.KGKVVT.EKIQEAKN.YREHF.DDVFNEKGW.YIL
Retrocopy
ECNFNILLATDS---RWHKQYPSNTSKVYSYFEYREK-TNSSNSKKIKYYKTVFYGLQYILHKYFKGKVVTLEKIQEAKNIYREHFHDDVFNEKGWRYIL


Parental protein
EKYKGHLPIEIKAVPEGSVIPRGNVLFTVESTDPECYWLTNWVETILVQIWYPITVATNSREQKKILAKYLLETSGSLERLEYKLHDFGYR-GVSSQETA
.KY.GHLPIEIKAVPEG..IPRGNVLFTVESTD..C.WLTNWVET..VQIWYPITV.TNSREQKKILA.YLLETSGSLE.LEYKLHDFGYR...SSQETA
Retrocopy
DKYNGHLPIEIKAVPEG-IIPRGNVLFTVESTDQKCNWLTNWVETLWVQIWYPITVTTNSREQKKILARYLLETSGSLEGLEYKLHDFGYR\SFSSQETA


Parental protein
GIGASAHLVNFKGTDTVAGIGVIKKFYGTKDPVPGFSLPAAEHSTITAWGKDHEKDAF
GIGASAHLVNFKGTDT.A.IGVIKKFYGTKDPVP.FS.PAAEHS.....GK...K.AF
Retrocopy
GIGASAHLVNFKGTDTIADIGVIKKFYGTKDPVPSFSVPAAEHSSV---GKEPRKEAF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide