RetrogeneDB ID:
retro_trub_36
Organism:
Location:
scaffold_253:251645-252382 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.62 %
Coverage:
91.11 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
PITPNB
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_36
TCGGTGGCTGAAGGCAGCAAGAAGGAGACAGGCGGAGGAGAGGGCATCGAGGTTCTGAAG
AACGAACCGTACGAGGGGGAAAGCGAAAAAGGACAGTACACCCACAAATCTATCATCTAA
AGAGTAAAGTCTCAGCATTTATAAAGCTGATTGCACCAGAGGGATCATTAGCTTTTCACG
AGAAGGCCTGGAACGCCTACCCCTACTGCCGCACTATTGTGACCAACGGGTACATGAAGG
ATGACATTGTGATAAAGATCAAGACGTGGCACAAGCCCGACATGGGAGCATTAGAAAATG
TTCATCAGCTGGACGAGGAGACCCTAAAGGGTGTGGAAGTGGTCTCTTTAGATATTGCAA
ACAAAGACGAAGAGGCTCCAGGCGACTACAAACCAGAGGAAGAGCCTGCTCTGCTCCAGT
CCACTAAAACGGGCAGAGGACCTCTAAGTCCTGAGTGGAAGGACGAGCTGAGGTCGGAAT
GTCCTCAAATGTGCACATACAAACTGGTCACAGTCCAATTCCACTGGTGGGGTCTGCAGA
CCAAAGTGGAGAACTTCATCCACAAGCAAGAAAAGCGTATTTTCACAAACTTTCACCGCC
AACTCTTCTGCTGGATGGACAGATGGGTGGGTTTGAGCATGGAGGACATCAGGCAGATGG
AAGATGAGACCCAAAAGGAGCTCGAGGAGCTGCGTAATAAAGGTCCAGTTCGAGGCACCA
CTGCCGCTCATGAGCAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SVAEASKNETGGGEGIEVLKNEPYEKEGEKGQYTHK-IYHLKSKVPGFVKMIAPEGSLVFHEKAWNAYPYCRTIVTNEYMKDDFMIKIETWHKPDMGTLE
SVAE.SK.ETGGGEGIEVLKNEPYE.E.EKGQYTHK.IYHLKSKV..F.K.IAPEGSL.FHEKAWNAYPYCRTIVTN.YMKDD..IKI.TWHKPDMG.LE
Retrocopy
SVAEGSKKETGGGEGIEVLKNEPYEGESEKGQYTHK/IYHLKSKVSAFIKLIAPEGSLAFHEKAWNAYPYCRTIVTNGYMKDDIVIKIKTWHKPDMGALE


Parental protein
NVHQLDEQTLKDVEVVPIDIANKDEVAPGDYKPEEDPALFHSAKTGRGPLSPEWKNELKSECPHMCAYKLVTVKFRWWGLQTKVENIIHKQEKRIFTNFH
NVHQLDE.TLK.VEVV..DIANKDE.APGDYKPEE.PAL..S.KTGRGPLSPEWK.EL.SECP.MC.YKLVTV.F.WWGLQTKVEN.IHKQEKRIFTNFH
Retrocopy
NVHQLDEETLKGVEVVSLDIANKDEEAPGDYKPEEEPALLQSTKTGRGPLSPEWKDELRSECPQMCTYKLVTVQFHWWGLQTKVENFIHKQEKRIFTNFH


Parental protein
RQLFCWIDKWVGLTMEDIRRMEDETQRELEELRSKGPVRGTSAAHEQ
RQLFCW.D.WVGL.MEDIR.MEDETQ.ELEELR.KGPVRGT.AAHEQ
Retrocopy
RQLFCWMDRWVGLSMEDIRQMEDETQKELEELRNKGPVRGTTAAHEQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide