RetrogeneDB ID:
retro_trub_37
Organism:
Location:
scaffold_3206:2015-3812 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
74.96 %
Coverage:
61.63 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_37
CTTGCTACGATGGCGGACAGAACAATTGGACGTCCACTGCTGCTGTTTATTTCGATTCTC
TCTCTCAAATCCGTCATTGGGCAAGTGAGCTACTCGGTACCAGAGGAAATGCCGAAAGGC
TCTTTTATTGGTGATATTGCTCAAGATCTGGGTTTGGATCCGAAAAGGCTGAAATCGGGA
AAGGCGCGCATCTATACGGGAGACAATGCGGAGTACATCGAGCTGAATAAAGAGAAAGGG
ATCCTGCTCATCAAAGACAGAATAGACAGAGAGGCCATCTGTGCCCAGACATCGCCCTGT
TCGTTGCATTTCCAGGTAATTTTAGAGAATCCGATGGAGTTTTACAGCATCACTGTCGAG
GTTACGGACATCAACGACAACGCCCCGACTTTTAATAGTGGTGAGATGAAATTCAGAATT
AGCGAATCTGCTGTTACAGGAGCTGTTTTCTCGTTGCAGCCAGCAATAGATCTGGATGTC
GGTATTAATGGATTACAAAATTATCGGTTGCATCCAGCCGACAACTTCGCTTTGAAGCTA
CAAAACCAAGCAGACGGAAGCAAGATGGTAGAAATGGTTTTACAGAAGCCATTAGACAGA
GAGACGAAAGATCATTTGACTCTGGTTCTGACTGCAGTAGACGGTGGTGAGCCGCAGCTC
TCCGGGACCGTGCAGATAGATATAAACGTACTAGATGCTAACGATAACGCTCCTGTTTTT
ACACAAAAAATCTACAAATCAACAATAAAAGAAAATTCGCTTCCTGGAACGAAAATAATA
ACTGTTCGTGCCTCCGATTTGGATGAAGGATCATACGGTAAAATTTCTTATAGTATACAA
AATATTCTCGACACTGTATCAGATTTATTTAATGTTGACAGAGAGACAGGGCAGGTTACA
TTAGTCGGAAATACAGACTTTGAAAAAAAACGACAGTATCAAGTACATGCCAGAGCCAGT
GATGAGGGAGGTTTAACTGATTCTTGTAAAATTATTGTTGAAATAACAGACACAAATGAC
AATGCTCCTGTTATAAATGTAATGTCAAAGTCCAGTGCAATAACTGAAGACATTCAGCCT
GGCACTGTTGTGACAATGATAAACATCCAAGATCCAGACTCGGGGGAGAATGGAAATGTT
CACTGTTATATTAAAGAAAGCATTCCATTCACAATTTCTTCAACATCCACTAACTTTTTC
AGTTTAACGACAGACAGTGAGCTGGACAGGGAGAGAGAATCCGAGTATAACATCACAGTG
AGCTGCTCTGATGAGGGAGTGCCCTCCCTCTCCAGCAGCGTCACTCTCACCTTACAGATC
TCTGATGTCAATGACAACCCTCCTGTCTTTGAGAGGAGCTCATATGAGGCCTACATTGTA
GAGAACAACACACCAGGTCTCTCTATATTCACAGTCAAAGCCAGAGACGCTGACTGGAAC
CAGAACGCTCGTGTTTCCTACATCCTGGAGGACTCCTCTGTTAACGGAGTTCCAGTCTCC
TCATATGTGTCCGTTAGTGCTGATAGTGGAGTCGTTCATGCAGTGCGCTCTTTTGACTAC
GAGCAGATCAAAGACTTTCACTTCCTGGTCAAAGCTCAGGATGGAGGTTCTCCTCCACTC
AGCAGCAACGTGAGCGTGAAAATCCTGATCCAGGACCAGAACGATAACCCCCCTCAGGTT
CTGTACCCGGTCCAGACTGGAGGCTCTATGGTGGCTGAAATGGTGCCTCGTTCAGCAGAT
GTGGGCTACCTGGTGACTAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LTVLLNRTMRRQVFFFTMLFSLDSVLGQVSYSIPEEMPKGSVLGNIARDLGLDVKRLKSGKARIFTGDSAEYIELNRDRGVLLVKDRIDRETLCKQTTPC
L.....RT..R....F....SL.SV.GQVSYS.PEEMPKGS..G.IA.DLGLD.KRLKSGKARI.TGD.AEYIELN...G.LL.KDRIDRE..C.QT.PC
Retrocopy
LATMADRTIGRPLLLFISILSLKSVIGQVSYSVPEEMPKGSFIGDIAQDLGLDPKRLKSGKARIYTGDNAEYIELNKEKGILLIKDRIDREAICAQTSPC


Parental protein
ALHLQIILENPMELFRITVEITDINDNSPVFKKEEMRFRISESAVIGAKFVLERAMDLDVGVNGLQSYSLKPTDNFQLKLQDQQDGSKKVEMILQKNLDR
.LH.Q.ILENPME...ITVE.TDINDN.P.F...EM.FRISESAV.GA.F.L..A.DLDVG.NGLQ.Y.L.P.DNF.LKLQ.Q.DGSK.VEM.LQK.LDR
Retrocopy
SLHFQVILENPMEFYSITVEVTDINDNAPTFNSGEMKFRISESAVTGAVFSLQPAIDLDVGINGLQNYRLHPADNFALKLQNQADGSKMVEMVLQKPLDR


Parental protein
ETQEHLSLILTAVDGGDPQLSGTMRVEISVLDANDNAPVFVQEVYKITIMENAPKGTVFTTVSAVDADEGSYGKVSYFITNTFDDAHAVFQVNEDSGEII
ET..HL.L.LTAVDGG.PQLSGT....I.VLDANDNAPVF.Q..YK.TI.EN...GT...TV.A.D.DEGSYGK.SY.I.N..D.....F.V....G...
Retrocopy
ETKDHLTLVLTAVDGGEPQLSGTVQIDINVLDANDNAPVFTQKIYKSTIKENSLPGTKIITVRASDLDEGSYGKISYSIQNILDTVSDLFNVDRETGQVT


Parental protein
LIGNIDYENAKNYHINIRASDDGGLTDSCKVIVEVMDVNDNKPTINIMSKSNIISEHSKLNTVVAMMNVQDPDSAENGRVHCFLNENMPLAIKSTSNNFY
L.GN.D......Y....RASD.GGLTDSCK.IVE..D.NDN.P.IN.MSKS..I.E.....TVV.M.N.QDPDS.ENG.VHC...E..P..I.STS.NF.
Retrocopy
LVGNTDFXXXRQYQVHARASDEGGLTDSCKIIVEITDTNDNAPVINVMSKSSAITEDIQPGTVVTMINIQDPDSGENGNVHCYIKESIPFTISSTSTNFF


Parental protein
SLVTDSELDRERESEYNITVSCSDEGVPSLSSSVTLTLQISDVNDNPPVFERSSYEAYIVENNTPGLSIFTVKARDADWNQNARVSYILEDSSVNGVPVS
SL.TDSELDRERESEYNITVSCSDEGVPSLSSSVTLTLQISDVNDNPPVFERSSYEAYIVENNTPGLSIFTVKARDADWNQNARVSYILEDSSVNGVPVS
Retrocopy
SLTTDSELDRERESEYNITVSCSDEGVPSLSSSVTLTLQISDVNDNPPVFERSSYEAYIVENNTPGLSIFTVKARDADWNQNARVSYILEDSSVNGVPVS


Parental protein
SYVSVSADSGVVHAVRSFDYEQIKDFHFLVKAQDGGSPPLSSNVSVKILIQDQNDNPPQVLYPVQTGGSMVAEMVPRSADVGYLVTKVVAVDVDSGQNA
SYVSVSADSGVVHAVRSFDYEQIKDFHFLVKAQDGGSPPLSSNVSVKILIQDQNDNPPQVLYPVQTGGSMVAEMVPRSADVGYLVTKVVAVDVDSGQNA
Retrocopy
SYVSVSADSGVVHAVRSFDYEQIKDFHFLVKAQDGGSPPLSSNVSVKILIQDQNDNPPQVLYPVQTGGSMVAEMVPRSADVGYLVTKVVAVDVDSGQNA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide