RetrogeneDB ID:
retro_trub_38
Organism:
Location:
scaffold_386:189288-189996 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.93 %
Coverage:
57.96 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_38
GTTAACCTCGCGATTCCTCCAGATAACTCAGAGTTGAGGAGAGAAGTGCTTGAAGTCCAT
GCCACTGTTGTCAGCCACCATGATCCAACTAATGTTTTGCTGAACTACTTTTCCACCTGG
TATAAGCTCAGAAGAGCTGTTGCATGGTTCCTAAAGCTGAAGAGTTTGCTCACCCAATGC
GCTCTCAAAAGAAAGGGGACCTTAAAGGCAGTCATGACTGGCCCCATGACACTCTCTGTT
CAAGACCTGGAAGAGGCAGAAGAAGCCATTGTGAAGTTCTGCCAAAATCAAGCACTTTTG
CAGGAGATGGCAAGTCTGCGCAATGGAAGGAATGTCAGCCGGAAAAGCTCCCTCTTCAAA
CTGGATCCATTCCTTGACCATGGCATATTAAGAATTGGTGGTCGCCTGAGCAGGATGGCT
ATGCCAAAGGAGCAGAAACATCCAGCTATCTTGCCTAAGAGGCATTTCGTCTCAGAGCTC
CTGCTTCGGCACATTCATCAGCAGGTTGGGCATTGTGGCAGAAATCACATTTTGGCAAGC
TTAAGGCAAAAATATTGGATTCCTTGTGCAAATTCCTTTGCAAGGGAAATTGTGAACAAT
TGTGTCCCCTGCAGGCGAAACTATGCACATGCAGGTGAACAAAAGCTGTCCGATCTGCCA
ATTGATCGTTTGACTCCTGACCTCCCTCCATTCTCATACGTCGGAGTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LKMAAPPLAVSSQFNKGMSVLSLTKECHHDPTNVLLNYFSTWYKLRRAVAWFLKLKSLLTQCTLKKKGTLKAVTAGPMTLSVQDLEEAEEAIVKFCQNQG
...A.PP....S...........T...HHDPTNVLLNYFSTWYKLRRAVAWFLKLKSLLTQC.LK.KGTLKAV..GPMTLSVQDLEEAEEAIVKFCQNQ.
Retrocopy
VNLAIPP--DNSELRREVLEVHATVVSHHDPTNVLLNYFSTWYKLRRAVAWFLKLKSLLTQCALKRKGTLKAVMTGPMTLSVQDLEEAEEAIVKFCQNQA


Parental protein
FSQEMASLRNGRNVSRKSSIFKLDPFLD--ILRVGGRLSRMAMPEKQKHPAILPKRHFISELLLRHIHQQVGHCGRNHILASLRQKY---CANSFAREIV
..QEMASLRNGRNVSRKSS.FKLDPFLD..ILR.GGRLSRMAMP..QKHPAILPKRHF.SELLLRHIHQQVGHCGRNHILASLRQKY...CANSFAREIV
Retrocopy
LLQEMASLRNGRNVSRKSSLFKLDPFLDHGILRIGGRLSRMAMPKEQKHPAILPKRHFVSELLLRHIHQQVGHCGRNHILASLRQKYWIPCANSFAREIV


Parental protein
NNCVPCRRNYARASEQKMSDLPIDHLTPDLPPFSYVGV
NNCVPCRRNYA.A.EQK.SDLPID.LTPDLPPFSYVGV
Retrocopy
NNCVPCRRNYAHAGEQKLSDLPIDRLTPDLPPFSYVGV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide