RetrogeneDB ID:
retro_trub_4
Organism:
Location:
scaffold_1:501163-501664 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.81 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
ube2g1a (2 of 2)
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]

Genomic region (view in browser)





>retro_trub_4
ATGACAGAACCCCGCTCAGCGCTGTTACTAAGGAAACAGCTTGCAGAACTAAACAAAAGT
CCAGTGGATGGATTTTCGGCAGGCTTGATCCAGGACAACGATCTCTATAGATGGGAAGTA
ATCATCATTGGGTCTGCGGACACATTCTACGAAGGCGGCGTGTTCAAAGCTCATCTGACA
TTTCCCAAAGATTATCCGCTCAGGCCACCTAAAATGAAATTCATCACAGATATATGGCAC
CCTAATATCGACAAGAACGGAGATGTTTGTATTTCTATTTTGCACGAGCCTGGGGAAGAC
AAGTATGGCTATGAGAAGCCAGAAGAGCGTTGGCTCCCCATCCACACAGTAGAAACCATC
ATGATCAGCGTCATCTCAATGCTGGCAGACCCAAATACCGAATCGCCTGCAAATGTGGAT
GCTGCCAAAGAGTGGAAGGAAGACAGAGATGAGTTCAAAAGGAAAGTTGCTCGTTGTGTA
CGGAAAAGCCAAGATGACTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTEPRSALLLRRQLTELNKSPVDGFSAGLIRDNDLYRWEVMIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITDIWHPNVDKNGDVCISILHEPGED
MTEPRSALLLR.QL.ELNKSPVDGFSAGLI.DNDLYRWEV.IIG..DT.YEGGVFKAHLTFPKDYPLRPPKMKFITDIWHPN.DKNGDVCISILHEPGED
Retrocopy
MTEPRSALLLRKQLAELNKSPVDGFSAGLIQDNDLYRWEVIIIGSADTFYEGGVFKAHLTFPKDYPLRPPKMKFITDIWHPNIDKNGDVCISILHEPGED


Parental protein
KYGYEKPEERWLPIHTVETIMISVISMLADPNSDSPANVDAAKEWREDRDGEFKRKVARCVRKSQDD
KYGYEKPEERWLPIHTVETIMISVISMLADPN..SPANVDAAKEW.EDRD.EFKRKVARCVRKSQDD
Retrocopy
KYGYEKPEERWLPIHTVETIMISVISMLADPNTESPANVDAAKEWKEDRD-EFKRKVARCVRKSQDD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide