RetrogeneDB ID:
retro_trub_40
Organism:
Location:
scaffold_480:9869-11707 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.0 %
Coverage:
77.14 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_40
AACAAGAAGGTTGAACTGGTGTTAGAGAACAGACTTGATCGAGAGAAACAAAAGGAAATG
AATTTGCTGCTCACAGCTTTAGATGGAGGCTCTCCTCAGAGATCAGGTACTGTAGTCATA
CACGTCACTGTGCTGGATGCTAATGATAACGCCCCAGTGTTCAGTCAGGCCGTTTATAAA
GCCAGTCTGCCTGAAAACTCTCCTCTAGACACTGTAGTGATGCAGGTTAGTGCCACTGAT
GCAGATGAAGGAGTGAATGGAGAAGTGACTTATCAATTCAGCCACGTTTCTGATGACGAT
ATGAATATATTCTCAATTGACCCTAAAACTGGAGAAATCCGAGTGTCTGGTTTAATTGAC
TTTGAAGAAAAAAGATCTTTTGAAATGAGAGTCAAGGCTAAAGACGGGTTAGGTCTAACA
TCTTATGCCAATATTATAATAGACGTGATTGATAAAAATGATAATGCCCCCCAGGTTTAT
GTAAAATCACTGATCAGTCCTATCCCAGAAAATATCTCACCTGGTTCAGAAGTGGGCATC
ATTAATGTGCAAGATGGAGATTCACTCAAAAATGGACAAGTTCGTTGCTCCATTCAGCAA
AACGTCCCTTTTAAGCTGGTTCCTTCTATTAAAAACTATTATTCTCTGGTGACCACAGGA
CAACTGGACCGTGAACTAGTGTCTGATTACAACATTACAATCAGTGCCACTGACGAGGGC
TCTCCACCTCTGTCCTCCTCTAAAACGCTTCACTTGTCTGTAGCAGACATCAACGACAAC
CCCCCTGTGTTTGAGGAAGAGTCCTACAGCGCATATGTGAGTGAAAATAACAGAGCCGGG
TCCACTTTGTGTTCCGTTAGTGCTGGAGACCCCGACTGGAGACAAAACGGTACCGTGATT
TATTCTCTGTTAGCCGCTGAGGTGAACGGTGCTCCGGTGTCCTCTTATGTGTCTGTTAAT
GGAGACACGGGGCTGATCCACGCTGTCAGGTCCTTTGATTATGAACAGCTGAGGAGCTTT
AAAGTGCACGTGATGGCCAGAGACAACGGTCTCCTCCTCTCAGCAGTAACGTGACCGTCA
GTGTGTTCATATCAGACGTTAATGACAACTCTCCTCAAATACTGTATCCAGCCCCGGAGG
GCAACTCCTTCATGACCGAGCTGGTCCCCAAAGCTGCACACGGAGGCTCTCTGGTGTCCA
AAGTGATCGCTGTGGACGCCGACTCTGGACAGAATGCCTGGCTGTCGTACCATATAGTCA
AATCCAGCGATCCGGGACTCTTCTCTATCGGTGTCCACAGTGGAGAGATCAGGACGCAGC
GGGACATTTCTGAGTCTGACAGCATGAAACAGAACCTGATTGTGGCAGTGAAAGATAACG
GACAGCCCTCTCTCTCTGCCACCTGCTCCATGTATTTACTCATTTCTGATAACTTGGCTG
AGGTGCCAGAGCTGAAGGACATTTCTTATGATGAGAAGAATTCCAAACTGACCTCCTATC
TGATCATCGCGCTGGTGTCTGTGTCCACCTTCTTCCTGACCTTCATCATCATCATCCTGG
GTGTGAGGTTCTGTCGCAGGAGAAAGCCCAGAATGTTGTTTGACGGAGCAGTAACCATCC
CCGGCGCTTATCTCCCTCCTAATTACGCTGATGTTGACGGCACAGGAACTTTACGCAGCG
CTTACAATTATGACGCCTACCTGACAACAGGGTCTAGAACCAGTGACTTTAAGTTTGTGA
CATCTTACAATGACAACACACTTCCTGCTGAGCAGACTCTGAGGAAAAGCTCCACTGACT
TTGATGAGCCATTTGAAGACTTTCACACACCTGCAGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SKSVELVLDKELDREKEQNVNLVMVAVDGGNPQRSGTATIQITVLDANDNAPVFEQAVYKADLPENAALGTVVLTVSASDADEGVNGEVTYEFSRISDKA
.K.VELVL...LDREK....NL...A.DGG.PQRSGT..I..TVLDANDNAPVF.QAVYKA.LPEN..L.TVV..VSA.DADEGVNGEVTY.FS..SD..
Retrocopy
NKKVELVLENRLDREKQKEMNLLLTALDGGSPQRSGTVVIHVTVLDANDNAPVFSQAVYKASLPENSPLDTVVMQVSATDADEGVNGEVTYQFSHVSDDD


Parental protein
KKVFTLNSKTGEIKVSGPLDFESNPNYEMRIDAKDGFGLSSDCKLMIKITDINDNAPVIHVKSLTDPVPEDVSPGSEVGIINVQDRDSENNRQVRCSIQQ
...F....KTGEI.VSG..DFE.....EMR..AKDG.GL.S.....I...D.NDNAP...VKSL..P.PE..SPGSEVGIINVQD.DS..N.QVRCSIQQ
Retrocopy
MNIFSIDPKTGEIRVSGLIDFEEKRSFEMRVKAKDGLGLTSYANIIIDVIDKNDNAPQVYVKSLISPIPENISPGSEVGIINVQDGDSLKNGQVRCSIQQ


Parental protein
NVPFKLVPSIKNYYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEEESYSAYVSENNRAGSTLCSVSAGDPDWRQNGTVI
NVPFKLVPSIKNYYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEEESYSAYVSENNRAGSTLCSVSAGDPDWRQNGTVI
Retrocopy
NVPFKLVPSIKNYYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEEESYSAYVSENNRAGSTLCSVSAGDPDWRQNGTVI


Parental protein
YSLLAAEVNGAPVSSYVSVNGDTGLIHAVRSFDYEQLRSFKVHVMARDNG-SPPLSSNVTVSVFISDVNDNSPQILYPAPEGNSFMTELIRYCSHTHTVV
YSLLAAEVNGAPVSSYVSVNGDTGLIHAVRSFDYEQLRSFKVHVMARDNG.SPPLSSNVTVSVFISDVNDNSPQILYPAPEGNSFMTEL.....H....V
Retrocopy
YSLLAAEVNGAPVSSYVSVNGDTGLIHAVRSFDYEQLRSFKVHVMARDNG/SPPLSSNVTVSVFISDVNDNSPQILYPAPEGNSFMTELVPKAAHGGSLV


Parental protein
MQVSATDADEGVNKEITYGFDHVSDANQAFALNPKTGEVTTKRNTAESDSMKQNLIVAVKDNGQPSLSATCSMYLLISDNLAEVPELKDISYDEKNSKLT
..V.A.DAD.G.N....Y.....SD....F......GE..T.R...ESDSMKQNLIVAVKDNGQPSLSATCSMYLLISDNLAEVPELKDISYDEKNSKLT
Retrocopy
SKVIAVDADSGQNAWLSYHIVKSSDPG-LFSIGVHSGEIRTQRDISESDSMKQNLIVAVKDNGQPSLSATCSMYLLISDNLAEVPELKDISYDEKNSKLT


Parental protein
SYLIIALVSVSTFFLTFIIIILGVRFCRRRKPRMLFDGAVTIPGAYLPPNYADVDGTGTLRSAYNYDAYLTTGSRTSDFKFVTSYNDNTLPAEQTLRKSP
SYLIIALVSVSTFFLTFIIIILGVRFCRRRKPRMLFDGAVTIPGAYLPPNYADVDGTGTLRSAYNYDAYLTTGSRTSDFKFVTSYNDNTLPAEQTLRKS.
Retrocopy
SYLIIALVSVSTFFLTFIIIILGVRFCRRRKPRMLFDGAVTIPGAYLPPNYADVDGTGTLRSAYNYDAYLTTGSRTSDFKFVTSYNDNTLPAEQTLRKSS


Parental protein
TDFADVFGESDSSPE
TDF...F.......E
Retrocopy
TDFDEPFEDFHTPAE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide