RetrogeneDB ID:
retro_trub_41
Organism:
Location:
scaffold_54:476245-476674 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.32 %
Coverage:
82.18 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
SDHC
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_41
GCTGCTCTGAAGGGAACAACGGCCGAGGAGGAAATGAACAAGTTTTGGTCTACAAATGCC
AGATTAAAAAGACCCATTTCTCCACATCTCACCACTTACAAGTGGTCTCTCCCCATGATG
ATGTCCATCACACACAGGGTAATTGGGGTGGGCCTCAGTGGAGCTATCTGAGCCTTTGCA
GTGGCAGCGCTGATATTACCAGGAAATTATCCCAACTATTTGGACTCAATCCACTCGCTG
TCCATTGGCCCCTTCCTCATTGGGATGGCCAAGTTTTGCATTGTGTTCCCTACGTCCTAC
CACACTTACAATGGCATTCAACACTTGTGGTGGGATATTGGCAAAGGCTTCCAAATCCCT
GAAGTCTACTGCACTGGCTACATCGTTATTGGTCTCTCCATTGTAACCTCCACAGCTTTA
ATGTTTGTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AAPMGTTAKEEMNRFWSKNAKLNRPMSPHLTIYKWSVPMMMSIAHRGTGVGLSGAISAFAVAALVLPGNYPDYLDLISSLSIGPGLIGMAKFGIAFPASF
AA..GTTA.EEMN.FWS.NA.L.RP.SPHLT.YKWS.PMMMSI.HR..GVGLSGAI.AFAVAAL.LPGNYP.YLD.I.SLSIGP.LIGMAKF.I.FP.S.
Retrocopy
AALKGTTAEEEMNKFWSTNARLKRPISPHLTTYKWSLPMMMSITHRVIGVGLSGAI*AFAVAALILPGNYPNYLDSIHSLSIGPFLIGMAKFCIVFPTSY


Parental protein
HTYNGVRHLWWDIGKGFRIPEVYRTGYTVIGLSIVTSIALMLL
HTYNG..HLWWDIGKGF.IPEVY.TGY.VIGLSIVTS.ALM..
Retrocopy
HTYNGIQHLWWDIGKGFQIPEVYCTGYIVIGLSIVTSTALMFV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide