RetrogeneDB ID:
retro_trub_42
Organism:
Location:
scaffold_6052:4857-5736 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
90.78 %
Coverage:
55.81 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_42
ATGTTTTTGCTCTTTGCAACCGTCATCTGCCTTCCCACCACCATGATTCCAGAGGTTCTC
GGTGGTAATGTTTTGGTTTTTCCACACGGAGGAAGCCACTGGGTGAACATGAGGGTCCTG
ATTGAGGAGCTGCACTCCAGAGGACACAATGTGACGGTGGTCCGGGCTGCAGACAGCTGG
TACATCAGCCAAACGTCCCCACATTACAAGAGCATCACACTCGATGTCGCCGTCGGGGCA
AACGACACATTTTTCCATCACTTTGTTACTGAAGTTGTCAAGATCAAACGTCACCAAGGC
AACGCTTGGTCCCGTTTTGGATTAGACAGCGAGTTAAAAAACAACTTCTATGAATTGCAC
AGGAAAATATGTGAAGCGATTGTGCACATGTTTGAGAATGAAGACTTGATGGAATCCTTC
CAAGATTCCAAGTTTGACATAGTTCTGACAGATCCTGCCAACGGAGGAGGGGTCCTTCTG
GCTCACCGCCTCGGGTTGCCGTTGGTGTTCAACGCTCGGTGGACCGTCCACGGCGAGGCC
CACTTTGCTGTCGCACCCTCTCCCCTCTCTTACGTCCCACTTCCACCTTCAGAATTATCT
GACAAGATGAATTTCATTGAGAGGGTCAAGAACTTGCTTTTTTACATCATGAGGATGCAT
CTCTACAAGCAGGTTGTGGGGCCACATTATTCTGCGGTGGTCAGCCGTTACTTTGACCAA
GACACGGACTACTTCTCCCTGTTTCAAGCTGCTGACCTGTGGCTGATGAGAGTGGACTTT
GCATTTGAGTTTCCCCGTCCCACCATGCCTAATGTTGTCTATATGGGAGGGTTCCAGTGT
AAACCTGCCAAGCCTTTACCTGAACACCTGGAAGAGTTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MFLLFATIICLPTSMIPEVLGSNVLVFPHEGSHWVNMRVLIEELHSRGHNVTVVRAADSWYISQTSPHYKSITLDVAVGANDTFFHHFVTEVVKIKRHQG
MFLLFAT.ICLPT.MIPEVLG.NVLVFPH.GSHWVNMRVLIEELHSRGHNVTVVRAADSWYISQTSPHYKSITLDVAVGANDTFFHHFVTEVVKIKRHQG
Retrocopy
MFLLFATVICLPTTMIPEVLGGNVLVFPHGGSHWVNMRVLIEELHSRGHNVTVVRAADSWYISQTSPHYKSITLDVAVGANDTFFHHFVTEVVKIKRHQG


Parental protein
NAWYRFGLDSELKNNFYELHRKICEAIVHMFENEDLMESFQDSKFDIVLTDPANGGGVLLAHRLGLPLVFNARWTVHGEAHFAVAPSPLSYVPLPPSELS
NAW.RFGLDSELKNNFYELHRKICEAIVHMFENEDLMESFQDSKFDIVLTDPANGGGVLLAHRLGLPLVFNARWTVHGEAHFAVAPSPLSYVPLPPSELS
Retrocopy
NAWSRFGLDSELKNNFYELHRKICEAIVHMFENEDLMESFQDSKFDIVLTDPANGGGVLLAHRLGLPLVFNARWTVHGEAHFAVAPSPLSYVPLPPSELS


Parental protein
DKMNFIERVKNLLFYIMRISTTRKVDSEKSSLFSSQRIDPGTDYISLFQAADLWLMRVDFVFEYPRPTMPNVVYMGGFQCKPAKPLPEHLEEF
DKMNFIERVKNLLFYIMR......V.....S...S...D..TDY.SLFQAADLWLMRVDF.FE.PRPTMPNVVYMGGFQCKPAKPLPEHLEEF
Retrocopy
DKMNFIERVKNLLFYIMRMHLYKQVVGPHYSAVVSRYFDQDTDYFSLFQAADLWLMRVDFAFEFPRPTMPNVVYMGGFQCKPAKPLPEHLEEF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide