RetrogeneDB ID:
retro_trub_45
Organism:
Location:
scaffold_750:29358-30171 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.56 %
Coverage:
53.24 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
FZD4
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_45
CCCGACAAGTTCCAGTTTGTGGAGAAGAGCCAGTCGTGCGCGCCGCGCTGTTCTGCCGCC
GTGGACGTCTACTGGTCCAAGCAGGACAAGGACTTTGCCTTCATTTGGATGACAGTGTGG
TCCATTCTGTGCTTTATCTCCACCGCCTTCACCGTCCTCACCTTCTTCCTGGAGCCCCAC
CGCTTCCAGTACCCCGAACGGCCCATCATCTTCCTCTCAATGTGCTACAATGTCTACTCT
GTGGCTTTCATCATCCGCTCGGTGGCCGGCGCGGAGAACATTGCCTGCGACCGCGAGAAC
GGTGAGTTGTACATCATCCAGGAGGGGTTGGAGTCAACGGGCTGCACCATCGTCTTCCTC
ATCCTGTATTACTTTGGCATGGCCTCTTCCATCTGGTGGGTCATCCTCACTCTCACCTGG
TTCTTGGCTGCTGGGAAGAAGTGGGGCCACGAGGCCATTGAAGCCCACAGCAACTATTTC
CATATGGCCGCCTGGGGCATTCCGGCACTGAAGACCATCGTCATCCTCACCATGAGAAAG
GTGGCTGGAGATGAGCTGACAGGACTTTGCTACGTGGGCAGCATGGACGCCGGTGCGCTC
ACGGGCTTCGTTCTCACCCCTCTATCCTGCTACCTGATCATCGGGACCTCCTTCATCCTC
ACGGGCTTCGTGGCTCTTTTCCACATCCGAAAAGTGATGAAGACGGAGGGCACGAACACC
GAGAAGCTGGAGAAGCTGATGGTGAAAATAGGCATCTACTCCATCCTCTACACGGTGCCT
GCCACCTGCGTCATTGTCTGCTACTTCTACGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PDQYIWLKQTESCTLQCGYDSGLY-RRGTKVFTDAWMAVWAVLCFLSTTLTVLTFVLDSQRFSYPERPIIFLSMCCNLYSVAYLVRWTLGREHVSCDLEA
PD.........SC...C......Y.....K.F...WM.VW..LCF.ST..TVLTF.L...RF.YPERPIIFLSMC.N.YSVA...R...G.E...CD.E.
Retrocopy
PDKFQFVEKSQSCAPRCSAAVDVYWSKQDKDFAFIWMTVWSILCFISTAFTVLTFFLEPHRFQYPERPIIFLSMCYNVYSVAFIIRSVAGAENIACDREN


Parental protein
TAVPVLVQEGLKSTGCAIVFLLLYFFGMASSLWWVILTLTWFLAAGLKWGHEAIEMHSSYFHIAAWAIPAVKTIVILIMRLVDADDLTGLCYVGNQQQEA
.......QEGL.STGC.IVFL.LY.FGMASS.WWVILTLTWFLAAG.KWGHEAIE.HS.YFH.AAW.IPA.KTIVIL.MR.V..D.LTGLCYVG.....A
Retrocopy
GEL-YIIQEGLESTGCTIVFLILYYFGMASSIWWVILTLTWFLAAGKKWGHEAIEAHSNYFHMAAWGIPALKTIVILTMRKVAGDELTGLCYVGSMDAGA


Parental protein
LIGFVVAPLATYLLLGTLFICAGLVALFRIRSNLQKDGAKTDKLERLMVKIGVFSVLYTVPASTVIGCYIYQ
L.GFV..PL..YL..GT.FI..G.VALF.IR......G..T.KLE.LMVKIG..S.LYTVPA..VI.CY.Y.
Retrocopy
LTGFVLTPLSCYLIIGTSFILTGFVALFHIRKVMKTEGTNTEKLEKLMVKIGIYSILYTVPATCVIVCYFYE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide