RetrogeneDB ID:
retro_trub_46
Organism:
Location:
scaffold_77:845795-846910 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.63 %
Coverage:
84.88 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
IFT52
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_46
CAGTGTGACGCAGTGGCCTTCAATGCTTCCAAACGCGAGTTGTTTACTATCAACTCCAGG
TACAAATCCATGCAGCGCAGGCTGAGAGTGCAGTGGAGCGTCCAAAGCATGAGCGGCACG
CTGTCACTGGAGAGACTGAAGAGGGTCAGGTTGTGGATAACTGTTGGACCAAGGGAGAAG
TTCACAGCGTCAGAGCTGGAGGTGTTGAAGGAATACCTGGATGGGGGAGGACATGTGATG
GTTTTGCTTGGTGAAGGAGGAGAAACCAAATATAAGACCAACATCAACTTTCTCCTGGAG
GAACTTGGAATAGTGGTCAACAAAGACGCGGTTGTGAGGAACGTGTACCACAGGTACTTG
CATCCCAAAGAGGCACTTGTGTCTGACGGTGTGTTGAATAGAGAAATTAGTCGAGCTGCC
GATAAAGAGGTCAAGGGAACCTTTGAGGAGCCTCCTGGAAATGACCCAAAGGCTCTGGCG
TTTCTATATCCATACGGAGCCACGTTGAATGTGATGAAACCTGCTGTGGCGGTTCTCTCC
ACTGGTTCACTGTGCTTCCCTTTCAACCGGCCTGTGATGGCCTTCCGTGAAGGTAAGGGG
ACTGGAAAACTGGTCGTGCTGGGTTCCTGCCACATGTTCAGCGATCAATACATAGACAAA
GAGGAAAACAGCAAAATCCTGGACGCTGTCCTCCAGTGGATCATGACGGATGACGCTGGC
ATGAACGGGACTGACGCCGCAGTGCCGGCGATTTCAGAATACACCATGATACCGGACACT
CAGGTCCTGTCAGAGAAGCTCCAGCTGTGTTTCCAGCACAACGAGGACCATTCCAGAATT
TCACGTCTCTTTTCGATATGTCACTGTTTAACTTTTCTTCTGCGTCCCTACCCCGCATCG
TCAGCGCTTACAAGGAGCTTAACGTCAAATACGAGCCGCTCCACCGGGCGATCAGGCCAA
ACTTTGAGGCTCTGCTGCCTCCGCTTCAGCCGGCCGTCTTCCCACCTATTATCAGAGATT
TGTCTCCGCCTGTGTTGGAGCAGTTCGACCTCGATGAAGCCTTTCCCTCTGACAGAGAAG
ACGCCAGTAACTCCACCGACGACAATTTCGAATTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QCSLAVFNASKRELFTTNSGYKSMQKRLRAQWKIQSLKDELSPEKLKGVKLWITVGPREKFTASELEMLKDYMDGGGNVMVLLGEGGETKYETNINFLLE
QC....FNASKRELFT.NS.YKSMQ.RLR.QW..QS....LS.E.LK.V.LWITVGPREKFTASELE.LK.Y.DGGG.VMVLLGEGGETKY.TNINFLLE
Retrocopy
QCDAVAFNASKRELFTINSRYKSMQRRLRVQWSVQSMSGTLSLERLKRVRLWITVGPREKFTASELEVLKEYLDGGGHVMVLLGEGGETKYKTNINFLLE


Parental protein
EFGIMVNNDVVVRNVYYKYLHPKEALVSDGVLNREISRAAGKMATGTYDETLENDAKALTFLYPYGATLNVMKPAVAVLSTGSECFPFNRPILAFHQGKE
E.GI.VN.D.VVRNVY..YLHPKEALVSDGVLNREISRAA.K...GT..E...ND.KAL.FLYPYGATLNVMKPAVAVLSTGS.CFPFNRP..AF..GK.
Retrocopy
ELGIVVNKDAVVRNVYHRYLHPKEALVSDGVLNREISRAADKEVKGTFEEPPGNDPKALAFLYPYGATLNVMKPAVAVLSTGSLCFPFNRPVMAFREGKG


Parental protein
TGKLAVLGSCHIFSDQYIDKEENSKLMDVVLQWLTTDSIEMNQIDAEEPEITEYTIIPDSKGLSEKLHVCLQDGEENPR-DFTSLFNTSLFNLSSSLSLP
TGKL.VLGSCH.FSDQYIDKEENSK..D.VLQW..TD...MN..DA..P.I.EYT.IPD...LSEKL..C.Q..E...R..FTSLF..SLFN.SS..SLP
Retrocopy
TGKLVVLGSCHMFSDQYIDKEENSKILDAVLQWIMTDDAGMNGTDAAVPAISEYTMIPDTQVLSEKLQLCFQHNEDHSR/NFTSLFDMSLFNFSSA-SLP


Parental protein
DIISAYKELNVKYEPL-QLITPQFETPLPPLQPAVFPPAVRDLPPPMLDLFDLDEAFSSEKVRLAQLTNKCTDDDLEF
.I.SAYKELNVKYEPL...I.P.FE..LPPLQPAVFPP..RDL.PP.L..FDLDEAF.S........T....DD..EF
Retrocopy
RIVSAYKELNVKYEPLHRAIRPNFEALLPPLQPAVFPPIIRDLSPPVLEQFDLDEAFPSDREDASNST----DDNFEF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide