RetrogeneDB ID:
retro_trub_6
Organism:
Location:
scaffold_52:1283257-1284493 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
63.8 %
Coverage:
96.58 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
EIF4A2
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_6
ATGGACGAATGCATCCCGAAAACAATGAGAGCAGACGTCTTCAGAAGTGGACGACCAGAG
CGTCCAGAGCCGTGGCAGATGACGGAGAGGAAGCTGAGTTACAGCGTGGACAGTTTTGAG
GGCATGATGCTGAACGAGAATCTTCTCAGAGGCATCTTTGCGTATGGATTCGAGAAGCCT
TCCGCCATCCAACAGCAGGCCATTGTTCCGTGCATCAAAGGCTTTGATGTCATCGCACAG
TCCCAGTCGGGCACTGGCAAGACGGCCACCTACGTCATTGCCGCCCTGCAGAGAATCGAC
ATGATGAAAGAGGACACCCAGGCTATTATTCTCGCACCCACCAGGGAGCTGGCCAACCAA
ATTCAGAAAGTGGTGCTCAGTCTGGGGGACTACATGGGGGTCCGTTGCCATGCCTGCATT
GGGGGGACGAGCATTCATGAGGACATGGAGAACCTGAGGTCAGCGAACCCTCACGTCATG
GTGGGAACACCAGGTCGCGTCTTTGACGTATTAGCACGCAGGGCCGTCTCTGCCAAGGCC
ATAAGACTGCTGGTGCTTGACGAAGCTGATCAGATGCTGGGTAATGGCTTCAAGGACCAG
ATTCATGAAATCTTCTGTAAGCTGCCCACCAATGTCCAAGCCATCCTGCTGTCGGCGACC
ATGCCAGCTCATGTCCTGGAGGCCACAAAGATGTTCATGCAGGATCCAGTGAAAATTCTC
ATTAAAAGGGAGGAGCTGACCATGGAGGGCATTCAACAGTTCTACATTAAGACTGAAACA
GAAGAGAAGAAGCTGGAAAGCCTGTGTGGCCTGTACAGCACGCTCACCATAACTCAAGCT
GTCATTTTTGTCAACACCAGAAAAAAGGCCGAATGGCTGACTCAGGAGCTGATGTCCAAG
GATTTCACAGTCTCCGTTCTGCATAGTGAGATGGGGCAGAGCGAGAGGGATACCACCATG
AAGGAGTTCCGCTCCGGCTCCAGCCGAGTGTTCATCACCACCGACCTGCTGTCCCGAGGG
ATCGATGTTCAGCAAGTGTCGCTGGTCATCAACTTTGACCTCCCGACCAAATTAGAGAGC
TACATCCACAGGATCGGTCGCAGTGGCCGGTTTGGCAGGGGGGGAGTGGCGATCAACATG
GTGACGGAAGAGAGCCAACCCATGCTGGCCATTATTCAGAACTTCTATGACTTCAAAATC
AAGGAGCTTCCTGCAAACATGGTCGATATTGTCTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GGPDGMEPDGIIESNWTEITDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIDQKETQALVLAPTRE
G.P...EP....E.......D.F..M.L.E.LLRGI.AYGFEKPSAIQQ.AI.PCIKG.DVIAQ.QSGTGKTAT..I..LQ........TQA..LAPTRE
Retrocopy
GRPERPEPWQMTERKLSYSVDSFEGMMLNENLLRGIFAYGFEKPSAIQQQAIVPCIKGFDVIAQSQSGTGKTATYVIAALQRIDMMKEDTQAIILAPTRE


Parental protein
LAQQIQKVILALGDYMGAACHACIGGTNLRNEIQKLQAEAPHIVVGTPGRVFDMLTRGHLYSKLIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVL
LA.QIQKV.L.LGDYMG..CHACIGGT........L....PH..VGTPGRVFD.L.R.....K.I...VLDEAD.ML..GFKDQI.EIF.KL.TN.Q..L
Retrocopy
LANQIQKVVLSLGDYMGVRCHACIGGTSIHEDMENLRSANPHVMVGTPGRVFDVLARRAVSAKAIRLLVLDEADQMLGNGFKDQIHEIFCKLPTNVQAIL


Parental protein
LSATMPAEVLEVTKKFMRDPVRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKER
LSATMPA.VLE.TK.FM.DPV.IL.K.EELT.EGI.QFYI..E.EE.KL..LC.LY.TLTITQAVIF.NTR.K..WLT......DFTVS.LH..M.Q.ER
Retrocopy
LSATMPAHVLEATKMFMQDPVKILIKREELTMEGIQQFYIKTETEEKKLESLCGLYSTLTITQAVIFVNTRKKAEWLTQELMSKDFTVSVLHSEMGQSER


Parental protein
DVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEDDRRVLRDIETFYNTTVEEMPMNVADLI
D..M.EFRSGSSRV.ITTDLL.RGIDVQQVSLVIN.DLPT..E.YIHRIGR.GRFGR.GVAIN.VTE.....L..I..FY.....E.P.N..D..
Retrocopy
DTTMKEFRSGSSRVFITTDLLSRGIDVQQVSLVINFDLPTKLESYIHRIGRSGRFGRGGVAINMVTEESQPMLAIIQNFYDFKIKELPANMVDIV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide