RetrogeneDB ID:
retro_trub_7
Organism:
Location:
scaffold_291:100103-100913 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.06 %
Coverage:
97.01 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
NXPH1 (1 of 2)
Parental gene aliases:
No gene alias available
Parental gene description:
neurexophilin 1 [Source:HGNC Symbol;Acc:20693]

Genomic region (view in browser)





>retro_trub_7
TCAGAAGTGCTGTTTGGTTTATTCTGTTTTTTGTTGTTTTTTTCTTTTTACCAGGTTTCA
GGTGGTCAGGCCTCAAAGTCGGATATCATCAAATCAGGAAGCCCCAAAGCGACCGTAAAG
CATATATGGACAGAAAGTAGCAAAGAAATGTCGATCAGTAGGCTGCTGTCACAGACGCTT
CAGGGTAAAGAAAACACCACAGCTTTGGACCTTCGCTACGACACTCCGGAGCCATACTCC
GAGAAGGAACTCTGGGACTGGCTGAGGAACTCCACAGAGTTGCAGGAGTCTAGGTCGAGA
ACCAAACGGCGGCCAATGGTCAAGACAGGAAAGTTCAAGAAGATGTTTGGCTGGGGGGAC
TTCCACTCTAACATCAAGACTGTCAAGCTCAACCTGTTGATCACAGGCAAGATCGTGGAC
CACGGCAATGGCACCTTCAGCGTCTACTTCCGCCACAACTCTACAGGTCAGGGGAACGTG
TCTGTCAGCTTGGTCCCTCCTACCAAGATAGTTGAGTTTGATGTTGCAGCTCAGCAGTCG
GTCATTGATGTCAAGGACTCAAAGTCCTTCAACTGTCGCGTAGAGTATGAAAAGGTGGAG
AAAGGTGCCAAGAACACGCTTTGCAACTTTGATCCGTCCAAGACCTGCTACCAGGAGCAG
ACCCAGAGCCACGTGTCCTGGCTCTGCTCTAAACCCTTCAAAGTTATCTGCATCTTCATT
TCCTTCTACAGCACTGACTACAAACTGGTGCAGAAAGTGTGCCCAGACTATAATTACCAT
AGTGACACTCCCTACTTCCCCTCTGGTTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LLYILVNYLCRNVTGAGSGTSNLREPLKPK--LKTYWSESSRAFSISRLLAQTLYDKENFTSLDLNYDDADSYSKWEQWNRHYNVSSPQSPRSRTKRRPI
L...L.......V.G.....S.......PK...K..W.ESS...SISRLL.QTL..KEN.T.LDL.YD....YS..E.W....N....Q..RSRTKRRP.
Retrocopy
LFCFLLFFSFYQVSGGQASKSDIIKSGSPKATVKHIWTESSKEMSISRLLSQTLQGKENTTALDLRYDTPEPYSEKELWDWLRNSTELQESRSRTKRRPM


Parental protein
VKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTGQGNVSVGLVPPTKAVEFQ-QQEKTALENKETKLFNCRVEYEKVEKGTRNS
VKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTGQGNVSV.LVPPTK.VEF...........K..K.FNCRVEYEKVEKG..N.
Retrocopy
VKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTGQGNVSVSLVPPTKIVEFDVAAQQSVIDVKDSKSFNCRVEYEKVEKGAKNT


Parental protein
LCAHDPSQSCPQEQTQSHISWLCSKPFKVICIFITFYSTDYKLVQKVCPDYNYHSDTPYLPTG
LC..DPS..C.QEQTQSH.SWLCSKPFKVICIFI.FYSTDYKLVQKVCPDYNYHSDTPY.P.G
Retrocopy
LCNFDPSKTCYQEQTQSHVSWLCSKPFKVICIFISFYSTDYKLVQKVCPDYNYHSDTPYFPSG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide